Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GYH29_RS12635 Genome accession   NZ_AP019312
Coordinates   2772428..2773219 (-) Length   263 a.a.
NCBI ID   WP_039753413.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain CH06-BL     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2767428..2778219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYH29_RS12620 (CH06BL_25090) - 2769378..2769716 (+) 339 WP_019100167.1 P-II family nitrogen regulator -
  GYH29_RS12625 (CH06BL_25100) - 2769780..2770280 (-) 501 WP_157221982.1 hypothetical protein -
  GYH29_RS12630 (CH06BL_25110) - 2770759..2772285 (-) 1527 WP_161523849.1 hypothetical protein -
  GYH29_RS12635 (CH06BL_25120) comL 2772428..2773219 (-) 792 WP_039753413.1 outer membrane protein assembly factor BamD Machinery gene
  GYH29_RS12640 (CH06BL_25130) rluD 2773218..2774321 (+) 1104 WP_019100171.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GYH29_RS12645 (CH06BL_25140) pgeF 2774311..2775066 (+) 756 WP_161523850.1 peptidoglycan editing factor PgeF -
  GYH29_RS12650 (CH06BL_25150) - 2775223..2776014 (-) 792 WP_161523851.1 IS5 family transposase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30346.44 Da        Isoelectric Point: 6.9811

>NTDB_id=72382 GYH29_RS12635 WP_039753413.1 2772428..2773219(-) (comL) [Chromobacterium haemolyticum strain CH06-BL]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHYK
DNEPEQAIAAADRFIKLHPTHPNLDYLYYLKGLVFYNDDSGLLAKWAGQDMSERDPRAAREAFTAFRELVTRFPNSIYKE
DASKKMERLLDALGGNEMHVARYYMKRGAYLAAANRAQGVVKSYANTKYPEEALGIMVAAYDKLSMPQLRDDAKRVLALN
YPNSEYLKEGWSIEDMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=72382 GYH29_RS12635 WP_039753413.1 2772428..2773219(-) (comL) [Chromobacterium haemolyticum strain CH06-BL]
ATGAAAAGATACGTTGTCGCTGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGATGAGACTCG
CGGCTGGACCGTGGAAAAGCTGTATTCGGAAGCGCATGATGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTGGAAGCGCGTTTCCCTTACGGGCGTTACGCCCAGCAGGCGCAGATGGACCTGGCTTATACCCATTACAAG
GATAACGAGCCGGAGCAGGCCATCGCCGCCGCGGACCGTTTCATCAAGCTTCATCCCACCCATCCAAACCTGGACTACCT
CTATTATCTGAAAGGCTTGGTGTTTTACAACGATGATTCCGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCGAGC
GCGATCCGCGCGCCGCGCGCGAGGCCTTCACCGCCTTCCGCGAGCTGGTGACGCGCTTCCCCAACAGCATTTACAAGGAA
GACGCCTCCAAGAAGATGGAGCGGCTGCTGGATGCGCTGGGCGGCAACGAGATGCACGTGGCCCGCTATTACATGAAGCG
CGGCGCTTACCTGGCCGCGGCCAACCGCGCTCAGGGCGTGGTGAAGAGCTATGCCAACACCAAGTATCCGGAAGAGGCGC
TTGGCATCATGGTGGCGGCTTACGACAAGCTGTCCATGCCGCAACTGCGCGACGACGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAATAGCGAATACCTGAAAGAAGGCTGGTCCATTGAGGACATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.647

100

0.593
  comL Neisseria gonorrhoeae MS11

57.519

100

0.582

Multiple sequence alignment