Detailed information NTG0723707

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M5T29_RS21335
• Genome accession: NZ_CP103614
• Coordinates: 4361983..4362783 (+)
• Length: 266 a.a.
• NCBI ID: WP_040211570.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 3571
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4356983..4367783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5T29_RS21300 (M5T29_21300)	gspH	4357139..4357654 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
M5T29_RS21305 (M5T29_21305)	gspI	4357651..4358016 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
M5T29_RS21310 (M5T29_21310)	gspJ	4358013..4358609 (+)	597	WP_048975615.1	type II secretion system minor pseudopilin GspJ	-
M5T29_RS21315 (M5T29_21315)	gspK	4358606..4359592 (+)	987	WP_077259670.1	type II secretion system minor pseudopilin GspK	-
M5T29_RS21320 (M5T29_21320)	gspL	4359579..4360772 (+)	1194	WP_048975613.1	type II secretion system protein GspL	-
M5T29_RS21325 (M5T29_21325)	-	4360765..4361250 (+)	486	WP_025368434.1	type II secretion system protein M	-
M5T29_RS21330 (M5T29_21330)	-	4361240..4361986 (+)	747	WP_004145897.1	type II secretion system protein N	-
M5T29_RS21335 (M5T29_21335)	pilD	4361983..4362783 (+)	801	WP_040211570.1	A24 family peptidase	Machinery gene
M5T29_RS21340 (M5T29_21340)	hrpB	4362831..4365260 (-)	2430	WP_048975607.1	ATP-dependent helicase HrpB	-
M5T29_RS21345 (M5T29_21345)	thpR	4365333..4365869 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
M5T29_RS21350 (M5T29_21350)	sfsA	4365869..4366585 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
M5T29_RS21355 (M5T29_21355)	dksA	4366748..4367203 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=723707 M5T29_RS21335 WP_040211570.1 4361983..4362783(+) (pilD) [Klebsiella pneumoniae strain 3571]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWSRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=723707 M5T29_RS21335 WP_040211570.1 4361983..4362783(+) (pilD) [Klebsiella pneumoniae strain 3571]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGAGCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421