Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PYH57_RS04060 Genome accession   NZ_CP118810
Coordinates   836269..837351 (+) Length   360 a.a.
NCBI ID   WP_025174683.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7062     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831269..842351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH57_RS04040 (PYH57_04030) - 831639..832709 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  PYH57_RS04045 (PYH57_04035) - 833027..834082 (+) 1056 WP_000258152.1 MraY family glycosyltransferase -
  PYH57_RS04050 (PYH57_04040) - 834254..834895 (-) 642 WP_000192947.1 YigZ family protein -
  PYH57_RS04055 (PYH57_04045) fakB1 835039..835905 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  PYH57_RS04060 (PYH57_04050) comFA 836269..837351 (+) 1083 WP_025174683.1 DEAD/DEAH box helicase Machinery gene
  PYH57_RS04065 (PYH57_04055) - 837344..838018 (+) 675 WP_001057971.1 ComF family protein -
  PYH57_RS04070 (PYH57_04060) raiA 838079..838648 (+) 570 WP_108919260.1 ribosome-associated translation inhibitor RaiA -
  PYH57_RS04075 (PYH57_04065) secA 839065..841596 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  PYH57_RS04080 (PYH57_04070) - 841638..841736 (+) 99 Protein_792 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41996.54 Da        Isoelectric Point: 9.7563

>NTDB_id=723705 PYH57_RS04060 WP_025174683.1 836269..837351(+) (comFA) [Staphylococcus aureus strain 7062]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIEAM
IKTFSVYKHKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=723705 PYH57_RS04060 WP_025174683.1 836269..837351(+) (comFA) [Staphylococcus aureus strain 7062]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAGCAATG
ATTAAAACATTTTCGGTTTATAAGCATAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACAACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367
  comFA/cflA Streptococcus mitis SK321

37.356

96.667

0.361