Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PWP91_RS13070 Genome accession   NZ_CP118738
Coordinates   1053680..1054675 (+) Length   331 a.a.
NCBI ID   WP_371400349.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1048680..1059675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS05380 (PWP91_05380) rpsA 1049639..1050865 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  PWP91_RS05385 (PWP91_05385) - 1051016..1051732 (+) 717 WP_023189630.1 nucleoside phosphorylase -
  PWP91_RS05390 (PWP91_05390) pnuC 1051861..1052574 (+) 714 WP_274998919.1 nicotinamide riboside transporter PnuC -
  PWP91_RS13065 uvrC 1052669..1053631 (+) 963 Protein_1014 excinuclease ABC subunit UvrC -
  PWP91_RS13070 uvrC 1053680..1054675 (+) 996 WP_371400349.1 hypothetical protein Machinery gene
  PWP91_RS05400 (PWP91_05400) mutY 1054839..1056002 (+) 1164 WP_274998920.1 A/G-specific adenine glycosylase -
  PWP91_RS05405 (PWP91_05405) pepV 1056068..1057486 (+) 1419 WP_274998921.1 dipeptidase PepV -
  PWP91_RS05410 (PWP91_05410) acpS 1057589..1057948 (+) 360 WP_003132600.1 holo-ACP synthase -
  PWP91_RS05415 (PWP91_05415) alr 1057993..1059096 (+) 1104 WP_058206786.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36971.73 Da        Isoelectric Point: 10.1706

>NTDB_id=723599 PWP91_RS13070 WP_371400349.1 1053680..1054675(+) (uvrC) [Lactococcus lactis strain P-1]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=723599 PWP91_RS13070 WP_371400349.1 1053680..1054675(+) (uvrC) [Lactococcus lactis strain P-1]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAACGTGATATTTTG
AAAACGACTAAAGCAGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGACC
CTTTAGATGTAGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GCATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577