Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5S96_RS14285 Genome accession   NZ_CP103515
Coordinates   2900702..2901331 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 5444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2895702..2906331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S96_RS14270 (M5S96_14270) helD 2895944..2897998 (-) 2055 WP_001295354.1 DNA helicase IV -
  M5S96_RS14275 (M5S96_14275) yccF 2898121..2898567 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5S96_RS14280 (M5S96_14280) yccS 2898577..2900739 (+) 2163 WP_000875058.1 YccS family putative transporter -
  M5S96_RS14285 (M5S96_14285) sxy/tfoX 2900702..2901331 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5S96_RS14290 (M5S96_14290) sulA 2901550..2902059 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M5S96_RS14295 (M5S96_14295) ompA 2902416..2903456 (+) 1041 WP_001400178.1 porin OmpA -
  M5S96_RS14300 (M5S96_14300) matP 2903532..2903984 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M5S96_RS14305 (M5S96_14305) ycbZ 2904170..2905930 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=723155 M5S96_RS14285 WP_000839153.1 2900702..2901331(-) (sxy/tfoX) [Escherichia coli strain 5444]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=723155 M5S96_RS14285 WP_000839153.1 2900702..2901331(-) (sxy/tfoX) [Escherichia coli strain 5444]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1