Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PV796_RS18370 Genome accession   NZ_CP118574
Coordinates   4319122..4319721 (-) Length   199 a.a.
NCBI ID   WP_274914398.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4314122..4324721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS18350 - 4314473..4315048 (-) 576 WP_274914394.1 SigE family RNA polymerase sigma factor -
  PV796_RS18355 - 4315745..4316860 (-) 1116 WP_274914395.1 aspartate-semialdehyde dehydrogenase -
  PV796_RS18360 - 4316857..4318128 (-) 1272 WP_274914396.1 aspartate kinase -
  PV796_RS18365 - 4318467..4319129 (-) 663 WP_274914397.1 DUF5063 domain-containing protein -
  PV796_RS18370 recR 4319122..4319721 (-) 600 WP_274914398.1 recombination mediator RecR Machinery gene
  PV796_RS18375 - 4319799..4320152 (-) 354 WP_274914399.1 YbaB/EbfC family nucleoid-associated protein -
  PV796_RS18380 - 4320358..4322786 (-) 2429 Protein_3653 DNA polymerase III subunit gamma and tau -
  PV796_RS18395 - 4323251..4324531 (-) 1281 WP_274914400.1 site-specific integrase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21790.18 Da        Isoelectric Point: 4.9909

>NTDB_id=723036 PV796_RS18370 WP_274914398.1 4319122..4319721(-) (recR) [Streptomyces sp. WZ-12]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCTVCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=723036 PV796_RS18370 WP_274914398.1 4319122..4319721(-) (recR) [Streptomyces sp. WZ-12]
GTGTATGAGGGCGTGGTCCAGGACCTGATCGACGAGTTGGGCAGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACCGATGTCCGCCGGCTCGCGAACGCGCTGATGGAGGTCAAGGCCAAGGTCC
GGTTCTGCACCGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCCGGGTCTGCCTGGACCCGCGGCGCGATCCGGCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGGGAGTTCCGCGGCCGCTATCACGTCCTCGG
TGGGGCGATCAGTCCGATCGAGGGCGTCGGCCCCGACGACCTGCGGATACGGGAACTCCTGGCCCGGCTCGCGGACGGCA
CCGTCACCGAGCTGATCCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTATCTGGCCCGCATGGTCAAG
CCGATGGGCCTCAAGGTGACGCGACTGGCCAGTGGGCTGCCGGTCGGAGGCGATCTGGAGTATGCCGACGAGGTCACGCT
CGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452