Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PV796_RS17245 Genome accession   NZ_CP118574
Coordinates   4082612..4084024 (+) Length   470 a.a.
NCBI ID   WP_274914158.1    Uniprot ID   -
Organism   Streptomyces sp. WZ-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4077612..4089024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PV796_RS17230 - 4078634..4079560 (-) 927 WP_274914154.1 Ppx/GppA phosphatase family protein -
  PV796_RS17235 - 4079618..4080511 (+) 894 WP_274914155.1 hypothetical protein -
  PV796_RS17240 - 4080611..4082413 (-) 1803 WP_274914157.1 sigma-70 family RNA polymerase sigma factor -
  PV796_RS17245 radA/sms 4082612..4084024 (+) 1413 WP_274914158.1 DNA repair protein RadA Machinery gene
  PV796_RS17250 disA 4084157..4085278 (+) 1122 WP_067348330.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  PV796_RS17255 - 4085489..4086475 (-) 987 WP_274914159.1 NAD-dependent epimerase/dehydratase family protein -
  PV796_RS17260 - 4086641..4087468 (-) 828 WP_274914160.1 hypothetical protein -
  PV796_RS17265 - 4087664..4088206 (-) 543 WP_274919076.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49616.82 Da        Isoelectric Point: 7.9964

>NTDB_id=723031 PV796_RS17245 WP_274914158.1 4082612..4084024(+) (radA/sms) [Streptomyces sp. WZ-12]
MATRKASAKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGTPAVRTTAPGRVTTAALPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESASQVRLRADRIRALDDDLYLAAETDLSAV
LGHLDSVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAARLGFTHALVPSDPGKIPAGMRVLEVADVGEALSVLPKRVRREAPREEETRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=723031 PV796_RS17245 WP_274914158.1 4082612..4084024(+) (radA/sms) [Streptomyces sp. WZ-12]
ATGGCAACTCGTAAAGCGTCGGCCAAGGAGCGCCCCTCATACCGCTGCACGGAGTGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGTCCGGAATGCCAAGCGTGGGGCACGGTCGAGGAGTTCGGCGGCACCCCGGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGCAGGCAGGCCACCGCCCGCTCCACGGGCGTGCCGGAG
CTGGACCGCGTGCTGGGCGGCGGGCTGGTCCCCGGCGCGGTGGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGCCGAGCACCGCACCCTCTACGTCACCGGCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGCGCCGACCGCATCCGCGCCCTCGACGACGACCTCTATCTGGCCGCCGAGACCGATCTCTCCGCCGTC
CTCGGCCACTTGGACAGCGTCAAGCCCTCGCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGG
CGCCCCCGGCGGTATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACCC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGTCTCCTGGAGCACCTGGTCGACGTCGTGCTGCAC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTCGTCCGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGCCGAGCCGGTTC
CGGGGACGTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCCCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCCACCGTCGGCGGCGTGAAGCTCAGCGAGCCGGCCGCGGACC
TCGCCGTCGCCCTCGCCCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAATCTGGTCGCCATCGGCGAGGTCGGC
CTGGCCGGCGAGGTCCGTCGGGTCACCGGCGTCCAGCGCCGCCTGGCCGAGGCCGCCCGGCTCGGCTTCACCCACGCCCT
GGTCCCCAGCGACCCCGGCAAGATCCCCGCCGGGATGCGGGTCCTGGAGGTCGCCGACGTCGGCGAGGCGCTGTCCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCGCGGGAGGAGGAGACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402
  radA Streptococcus mitis SK321

44.056

91.277

0.402