Detailed information NTG0723021

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M5T26_RS21565
• Genome accession: NZ_CP103487
• Coordinates: 4418880..4419680 (+)
• Length: 266 a.a.
• NCBI ID: WP_044521058.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4413880..4424680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5T26_RS21530 (M5T26_21530)	gspH	4414033..4414548 (+)	516	WP_049014311.1	type II secretion system minor pseudopilin GspH	-
M5T26_RS21535 (M5T26_21535)	gspI	4414545..4414910 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
M5T26_RS21540 (M5T26_21540)	gspJ	4414907..4415503 (+)	597	WP_064155385.1	type II secretion system minor pseudopilin GspJ	-
M5T26_RS21545 (M5T26_21545)	gspK	4415500..4416480 (+)	981	WP_077266698.1	type II secretion system minor pseudopilin GspK	-
M5T26_RS21550 (M5T26_21550)	gspL	4416473..4417669 (+)	1197	WP_044521060.1	type II secretion system protein GspL	-
M5T26_RS21555 (M5T26_21555)	-	4417662..4418147 (+)	486	WP_023292019.1	type II secretion system protein M	-
M5T26_RS21560 (M5T26_21560)	-	4418137..4418865 (+)	729	WP_044521059.1	type II secretion system protein N	-
M5T26_RS21565 (M5T26_21565)	pilD	4418880..4419680 (+)	801	WP_044521058.1	A24 family peptidase	Machinery gene
M5T26_RS21570 (M5T26_21570)	hrpB	4419728..4422157 (-)	2430	WP_195805832.1	ATP-dependent helicase HrpB	-
M5T26_RS21575 (M5T26_21575)	thpR	4422230..4422766 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
M5T26_RS21580 (M5T26_21580)	sfsA	4422766..4423482 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
M5T26_RS21585 (M5T26_21585)	dksA	4423645..4424100 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29290.82 Da
• Isoelectric Point: 8.8894

>NTDB_id=723021 M5T26_RS21565 WP_044521058.1 4418880..4419680(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILSGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=723021 M5T26_RS21565 WP_044521058.1 4418880..4419680(+) (pilD) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain 5463]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCTCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.014	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425