Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OP485_RS03680 Genome accession   NZ_CP118566
Coordinates   763460..763957 (+) Length   165 a.a.
NCBI ID   WP_096314562.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA_HN005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 758460..768957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP485_RS03665 (OP485_03665) bfr 758469..758933 (+) 465 WP_003093668.1 bacterioferritin -
  OP485_RS03670 (OP485_03670) uvrA 759004..761841 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  OP485_RS03675 (OP485_03675) - 762055..763443 (+) 1389 WP_003103910.1 MFS transporter -
  OP485_RS03680 (OP485_03680) ssb 763460..763957 (+) 498 WP_096314562.1 single-stranded DNA-binding protein Machinery gene
  OP485_RS03685 (OP485_03685) pchA 764046..765476 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  OP485_RS03690 (OP485_03690) pchB 765473..765778 (-) 306 WP_346364036.1 isochorismate lyase PchB -
  OP485_RS03695 (OP485_03695) pchC 765778..766533 (-) 756 WP_096314561.1 pyochelin biosynthesis editing thioesterase PchC -
  OP485_RS03700 (OP485_03700) pchD 766530..768173 (-) 1644 WP_023085650.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18561.45 Da        Isoelectric Point: 5.2781

>NTDB_id=722898 OP485_RS03680 WP_096314562.1 763460..763957(+) (ssb) [Pseudomonas aeruginosa strain PA_HN005]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPRETMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=722898 OP485_RS03680 WP_096314562.1 763460..763957(+) (ssb) [Pseudomonas aeruginosa strain PA_HN005]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGACCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.63
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.582
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.515
  ssb Neisseria meningitidis MC58

47.486

100

0.515