Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NX050_RS03090 Genome accession   NZ_CP103456
Coordinates   599229..599918 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 594229..604918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS03065 (NX050_03065) - 594561..595016 (-) 456 WP_014481057.1 hypothetical protein -
  NX050_RS03070 (NX050_03070) - 595065..595520 (-) 456 WP_041516563.1 hypothetical protein -
  NX050_RS03075 (NX050_03075) - 596127..597119 (-) 993 WP_014481056.1 LCP family protein -
  NX050_RS03080 (NX050_03080) - 597119..597772 (-) 654 WP_014481055.1 YigZ family protein -
  NX050_RS03085 (NX050_03085) degS 597989..599146 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NX050_RS03090 (NX050_03090) degU 599229..599918 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  NX050_RS03095 (NX050_03095) fakBA 600016..600861 (+) 846 WP_014481053.1 DegV family protein -
  NX050_RS03100 (NX050_03100) comFA 600968..602359 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NX050_RS03105 (NX050_03105) comFB 602419..602715 (+) 297 WP_003227989.1 late competence protein ComFB -
  NX050_RS03110 (NX050_03110) comFC 602679..603401 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  NX050_RS03115 (NX050_03115) yvyF 603474..603893 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  NX050_RS03120 (NX050_03120) flgM 603974..604240 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX050_RS03125 (NX050_03125) flgN 604256..604738 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=722853 NX050_RS03090 WP_014481054.1 599229..599918(+) (degU) [Bacillus subtilis strain PN176 (HK176)]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=722853 NX050_RS03090 WP_014481054.1 599229..599918(+) (degU) [Bacillus subtilis strain PN176 (HK176)]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996