Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NX856_RS19545 Genome accession   NZ_CP103412
Coordinates   3848728..3848847 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain HF-14109     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3843728..3853847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX856_RS19525 (NX856_19525) - 3844078..3844590 (+) 513 Protein_3801 bacteriocin biosynthesis protein AlbG -
  NX856_RS19530 (NX856_19530) - 3844597..3845973 (-) 1377 WP_046702210.1 YncE family protein -
  NX856_RS19535 (NX856_19535) - 3846013..3847368 (-) 1356 WP_015240776.1 YncE family protein -
  NX856_RS19540 (NX856_19540) rapF 3847599..3848744 (+) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  NX856_RS19545 (NX856_19545) phrF 3848728..3848847 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NX856_RS19550 (NX856_19550) - 3849045..3849248 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  NX856_RS19555 (NX856_19555) - 3849262..3849465 (+) 204 WP_007407641.1 hypothetical protein -
  NX856_RS19560 (NX856_19560) - 3849500..3849685 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  NX856_RS19565 (NX856_19565) - 3849871..3850152 (+) 282 WP_007407643.1 hypothetical protein -
  NX856_RS19570 (NX856_19570) - 3850196..3850708 (+) 513 WP_031304384.1 stage II sporulation protein M -
  NX856_RS19575 (NX856_19575) - 3851299..3851517 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  NX856_RS19580 (NX856_19580) speB 3851685..3852557 (-) 873 WP_095352572.1 agmatinase -
  NX856_RS19585 (NX856_19585) speE 3852616..3853446 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=722694 NX856_RS19545 WP_015240778.1 3848728..3848847(+) (phrF) [Bacillus velezensis strain HF-14109]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=722694 NX856_RS19545 WP_015240778.1 3848728..3848847(+) (phrF) [Bacillus velezensis strain HF-14109]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462