Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PXH81_RS05780 Genome accession   NZ_CP118539
Coordinates   1280586..1281182 (-) Length   198 a.a.
NCBI ID   WP_038231933.1    Uniprot ID   -
Organism   Xylella fastidiosa strain ICMP 15197     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275586..1286182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH81_RS05755 (PXH81_05755) - 1275724..1276677 (+) 954 WP_004572800.1 MoxR family ATPase -
  PXH81_RS05760 (PXH81_05760) - 1276680..1277639 (+) 960 WP_038231942.1 DUF58 domain-containing protein -
  PXH81_RS05765 (PXH81_05765) - 1277632..1279689 (+) 2058 WP_004572798.1 DUF3488 and transglutaminase-like domain-containing protein -
  PXH81_RS05770 (PXH81_05770) - 1279622..1280104 (+) 483 WP_100206159.1 Slp family lipoprotein -
  PXH81_RS05775 (PXH81_05775) - 1280171..1280518 (-) 348 WP_038231935.1 histidine triad nucleotide-binding protein -
  PXH81_RS05780 (PXH81_05780) recR 1280586..1281182 (-) 597 WP_038231933.1 recombination mediator RecR Machinery gene
  PXH81_RS05785 (PXH81_05785) - 1281376..1281696 (-) 321 WP_004572794.1 YbaB/EbfC family nucleoid-associated protein -
  PXH81_RS05790 (PXH81_05790) dnaX 1281703..1283334 (-) 1632 WP_004572793.1 DNA polymerase III subunit gamma/tau -
  PXH81_RS05800 (PXH81_05800) - 1283963..1284463 (+) 501 WP_228446137.1 DNA replication protein DnaD -
  PXH81_RS05805 (PXH81_05805) - 1284453..1284605 (+) 153 WP_012382609.1 hypothetical protein -
  PXH81_RS05810 (PXH81_05810) - 1285478..1285777 (-) 300 WP_004572790.1 DNA adenine methylase -
  PXH81_RS11870 - 1285770..1285943 (-) 174 WP_306308839.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21791.80 Da        Isoelectric Point: 6.4024

>NTDB_id=722649 PXH81_RS05780 WP_038231933.1 1280586..1281182(-) (recR) [Xylella fastidiosa strain ICMP 15197]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHMLEREREGGQRLADVLSRAIEKIGHCTECRDFSETQICAICANSSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=722649 PXH81_RS05780 WP_038231933.1 1280586..1281182(-) (recR) [Xylella fastidiosa strain ICMP 15197]
ATGAGTACACATTTGCTTGAGCAATTAATTGACGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGTAT
GGCCTACCATATGCTTGAGCGCGAGCGTGAAGGTGGACAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAGAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCCAAATCTGTGCGATCTGTGCTAACTCCAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTATCGTGGACTATATTTTATTTTGCA
GGGGCGCTTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTAGGACAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTTATCATTGCGACTAATGCGACGGTGGAAGGTGAGACGACAGCGCACTACTTAGCGCTCCTGGCGCGC
CAACACGGTATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCACGCGTTCGGCACCCGTACTGAAGTGGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(39-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

41.667

96.97

0.404
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374