Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EKM72_RS04825 Genome accession   NZ_AP019305
Coordinates   858239..858634 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM9458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 853239..863634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM72_RS04800 thiE 853838..854479 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  EKM72_RS04805 thiM 854481..855272 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  EKM72_RS04810 thiD 855256..856086 (-) 831 WP_125571287.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EKM72_RS04815 tenA 856079..856768 (-) 690 WP_000396077.1 thiaminase II -
  EKM72_RS04820 sceD 857155..857850 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  EKM72_RS04825 ssb 858239..858634 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EKM72_RS04830 - 858828..859268 (+) 441 WP_000846746.1 YwpF-like family protein -
  EKM72_RS04835 fabZ 859327..859767 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EKM72_RS04840 murA 859801..861066 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EKM72_RS04845 - 861177..861410 (-) 234 WP_000384523.1 DUF1146 family protein -
  EKM72_RS04850 - 861542..861634 (-) 93 WP_001790611.1 hypothetical protein -
  EKM72_RS04855 - 861972..862376 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=72263 EKM72_RS04825 WP_000932694.1 858239..858634(-) (ssb) [Staphylococcus aureus strain TUM9458]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=72263 EKM72_RS04825 WP_000932694.1 858239..858634(-) (ssb) [Staphylococcus aureus strain TUM9458]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment