Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   NX839_RS00190 Genome accession   NZ_CP103400
Coordinates   25165..26436 (+) Length   423 a.a.
NCBI ID   WP_086439858.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain JNU 532     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 20165..31436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX839_RS00160 (NX839_00160) rpsB 20323..21102 (+) 780 WP_021815938.1 30S ribosomal protein S2 -
  NX839_RS00165 (NX839_00165) tsf 21193..22071 (+) 879 WP_259027449.1 translation elongation factor Ts -
  NX839_RS00170 (NX839_00170) pyrH 22153..22878 (+) 726 WP_003681954.1 UMP kinase -
  NX839_RS00175 (NX839_00175) frr 22878..23438 (+) 561 WP_021815941.1 ribosome recycling factor -
  NX839_RS00180 (NX839_00180) - 23565..24338 (+) 774 WP_369708161.1 isoprenyl transferase -
  NX839_RS00185 (NX839_00185) - 24355..25143 (+) 789 WP_252772737.1 phosphatidate cytidylyltransferase -
  NX839_RS00190 (NX839_00190) eeP 25165..26436 (+) 1272 WP_086439858.1 RIP metalloprotease RseP Regulator
  NX839_RS00195 (NX839_00195) - 26470..28191 (+) 1722 WP_086439857.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46217.61 Da        Isoelectric Point: 6.3997

>NTDB_id=722508 NX839_RS00190 WP_086439858.1 25165..26436(+) (eeP) [Limosilactobacillus fermentum strain JNU 532]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKTTKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=722508 NX839_RS00190 WP_086439858.1 25165..26436(+) (eeP) [Limosilactobacillus fermentum strain JNU 532]
TTGATCATCACCATCATTACTTTTATTATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTGGTGCGCGAGTTTTCGATCGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTCGGGGGCTACGTTCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTTCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTCTTGGGCGGGGTAACCAAGGATT
CGGTGGCTGCTAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAATCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGACCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCACAGGCGACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCTGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCCTCTTGATGATCCTGATGGTCCTCGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(209-269)

Peptidase family M50 (Peptidase_M50)

(7-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482
  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482