Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PWK65_RS05930 Genome accession   NZ_CP118481
Coordinates   1162169..1162765 (-) Length   198 a.a.
NCBI ID   WP_002989144.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20185322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157169..1167765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWK65_RS05915 (PWK65_05855) - 1158656..1159351 (-) 696 WP_002989150.1 TIGR02206 family membrane protein -
  PWK65_RS05920 (PWK65_05860) murF 1159432..1160823 (-) 1392 WP_002989148.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  PWK65_RS05925 (PWK65_05865) - 1161022..1162068 (-) 1047 WP_002989146.1 D-alanine--D-alanine ligase -
  PWK65_RS05930 (PWK65_05870) recR 1162169..1162765 (-) 597 WP_002989144.1 recombination mediator RecR Machinery gene
  PWK65_RS05935 - 1162812..1162994 (-) 183 WP_011527680.1 penicillin-binding protein -
  PWK65_RS05940 (PWK65_05875) - 1163553..1164332 (-) 780 WP_002989141.1 formate/nitrite transporter family protein -
  PWK65_RS05945 (PWK65_05880) - 1164456..1164998 (-) 543 WP_002989140.1 hypothetical protein -
  PWK65_RS05950 (PWK65_05885) - 1165159..1165680 (-) 522 WP_002983930.1 transcription repressor NadR -
  PWK65_RS05955 (PWK65_05890) - 1165788..1166483 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  PWK65_RS05960 (PWK65_05895) - 1166722..1167657 (+) 936 WP_002989136.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21662.82 Da        Isoelectric Point: 4.8853

>NTDB_id=722490 PWK65_RS05930 WP_002989144.1 1162169..1162765(-) (recR) [Streptococcus pyogenes strain 20185322]
MLYPTPIAKLMDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=722490 PWK65_RS05930 WP_002989144.1 1162169..1162765(-) (recR) [Streptococcus pyogenes strain 20185322]
GTGCTTTATCCAACACCCATTGCAAAGTTAATGGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTTTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495