Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NX823_RS13185 Genome accession   NZ_CP103352
Coordinates   2473772..2474389 (-) Length   205 a.a.
NCBI ID   WP_046160608.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117508     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2468772..2479389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS13155 (NX823_13155) rpsT 2469074..2469340 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  NX823_RS13160 (NX823_13160) holA 2469355..2470398 (-) 1044 WP_014480310.1 DNA polymerase III subunit delta -
  NX823_RS13165 (NX823_13165) - 2470438..2470587 (-) 150 WP_003229985.1 hypothetical protein -
  NX823_RS13170 (NX823_13170) yqzM 2470628..2470762 (+) 135 WP_003229983.1 YqzM family protein -
  NX823_RS13175 (NX823_13175) comEC 2470802..2473132 (-) 2331 WP_069837640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NX823_RS13180 (NX823_13180) comEB 2473136..2473705 (-) 570 WP_003229978.1 ComE operon protein 2 -
  NX823_RS13185 (NX823_13185) comEA 2473772..2474389 (-) 618 WP_046160608.1 competence protein ComEA Machinery gene
  NX823_RS13190 (NX823_13190) comER 2474473..2475294 (+) 822 WP_032726195.1 late competence protein ComER -
  NX823_RS13195 (NX823_13195) yqeM 2475360..2476103 (-) 744 WP_069837641.1 class I SAM-dependent methyltransferase -
  NX823_RS13200 (NX823_13200) rsfS 2476100..2476456 (-) 357 WP_014480315.1 ribosome silencing factor -
  NX823_RS13205 (NX823_13205) yqeK 2476474..2477034 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NX823_RS13210 (NX823_13210) nadD 2477024..2477593 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  NX823_RS13215 (NX823_13215) yhbY 2477605..2477895 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  NX823_RS13220 (NX823_13220) aroE 2477889..2478731 (-) 843 WP_014480317.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21738.48 Da        Isoelectric Point: 4.7284

>NTDB_id=722309 NX823_RS13185 WP_046160608.1 2473772..2474389(-) (comEA) [Bacillus subtilis strain SRCM117508]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKEPVKQAVPTEAENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEEITKVSGIGEKLFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=722309 NX823_RS13185 WP_046160608.1 2473772..2474389(-) (comEA) [Bacillus subtilis strain SRCM117508]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGGCAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGAGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTTTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGAAATCACTAAGGT
TTCAGGAATAGGTGAAAAGTTATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus MW2

35.909

100

0.385
  comEA Staphylococcus aureus N315

35

100

0.376