Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NX823_RS06330 Genome accession   NZ_CP103352
Coordinates   1249252..1250403 (+) Length   383 a.a.
NCBI ID   WP_029726275.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117508     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1244252..1255403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS06295 (NX823_06295) yjbB 1244924..1246141 (+) 1218 WP_095010820.1 MFS transporter -
  NX823_RS06300 (NX823_06300) yjbC 1246305..1246883 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NX823_RS06305 (NX823_06305) spx 1247064..1247459 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  NX823_RS06310 (NX823_06310) yjbE 1247502..1248158 (-) 657 WP_014479447.1 TerC family protein -
  NX823_RS06315 (NX823_06315) - 1248328..1248468 (+) 141 WP_119122854.1 hypothetical protein -
  NX823_RS06320 (NX823_06320) mecA 1248435..1249091 (+) 657 WP_015383354.1 adaptor protein MecA Regulator
  NX823_RS06325 (NX823_06325) - 1249086..1249208 (-) 123 WP_003245684.1 hypothetical protein -
  NX823_RS06330 (NX823_06330) coiA 1249252..1250403 (+) 1152 WP_029726275.1 competence protein CoiA Machinery gene
  NX823_RS06335 (NX823_06335) pepF 1250633..1252462 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  NX823_RS06340 (NX823_06340) - 1252500..1252667 (-) 168 WP_003244944.1 hypothetical protein -
  NX823_RS06345 (NX823_06345) spxH 1252982..1253881 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  NX823_RS06350 (NX823_06350) bhbI 1253878..1254276 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  NX823_RS06355 (NX823_06355) cwlQ 1254531..1255265 (-) 735 WP_014479451.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44801.93 Da        Isoelectric Point: 10.0034

>NTDB_id=722283 NX823_RS06330 WP_029726275.1 1249252..1250403(+) (coiA) [Bacillus subtilis strain SRCM117508]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFIRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=722283 NX823_RS06330 WP_029726275.1 1249252..1250403(+) (coiA) [Bacillus subtilis strain SRCM117508]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTTGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTATCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAATTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.928

97.389

0.963