Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NX819_RS02360 Genome accession   NZ_CP103351
Coordinates   424845..425294 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM115947     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 419845..430294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS02325 (NX819_02325) yckA 420003..420683 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NX819_RS02330 (NX819_02330) yckB 420693..421556 (-) 864 WP_259266318.1 transporter substrate-binding domain-containing protein -
  NX819_RS02335 (NX819_02335) - 421718..421915 (+) 198 WP_119122841.1 hypothetical protein -
  NX819_RS02340 (NX819_02340) yckC 421934..422384 (+) 451 Protein_418 RDD family protein -
  NX819_RS02345 (NX819_02345) yckD 422466..422798 (+) 333 WP_003246247.1 YckD family protein -
  NX819_RS02350 (NX819_02350) bglC 422950..424383 (+) 1434 WP_038428341.1 6-phospho-beta-glucosidase -
  NX819_RS02355 (NX819_02355) nin/comJ 424420..424818 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  NX819_RS02360 (NX819_02360) nucA/comI 424845..425294 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  NX819_RS02365 (NX819_02365) tlpC 425462..427183 (-) 1722 WP_038428342.1 methyl-accepting chemotaxis protein TlpC -
  NX819_RS02370 (NX819_02370) hxlB 427294..427851 (-) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  NX819_RS02375 (NX819_02375) hxlA 427857..428489 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  NX819_RS02380 (NX819_02380) hxlR 428723..429085 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=722185 NX819_RS02360 WP_017696127.1 424845..425294(-) (nucA/comI) [Bacillus subtilis strain SRCM115947]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=722185 NX819_RS02360 WP_017696127.1 424845..425294(-) (nucA/comI) [Bacillus subtilis strain SRCM115947]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98