Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NX810_RS11930 Genome accession   NZ_CP103350
Coordinates   2305678..2306298 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300678..2311298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS11890 (NX810_11890) ptsA 2301806..2302312 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  NX810_RS11895 (NX810_11895) ypqA 2302450..2302869 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  NX810_RS11900 (NX810_11900) sppG 2302890..2303267 (-) 378 WP_015251832.1 YppG family protein -
  NX810_RS11905 (NX810_11905) yppF 2303455..2303643 (+) 189 WP_003230690.1 YppF family protein -
  NX810_RS11910 (NX810_11910) yppE 2303685..2304056 (-) 372 WP_029726786.1 YppE family protein -
  NX810_RS11915 (NX810_11915) yppD 2304102..2304347 (-) 246 WP_015251831.1 YppD family protein -
  NX810_RS11920 (NX810_11920) sspM 2304546..2304650 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NX810_RS11925 (NX810_11925) yppC 2304675..2305637 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  NX810_RS11930 (NX810_11930) recU 2305678..2306298 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NX810_RS11935 (NX810_11935) ponA 2306320..2309064 (+) 2745 WP_088326351.1 transglycosylase domain-containing protein -
  NX810_RS11940 (NX810_11940) ypoC 2309140..2309634 (-) 495 WP_029726783.1 YpoC family protein -
  NX810_RS11945 (NX810_11945) nth 2309631..2310290 (-) 660 WP_009967580.1 endonuclease III -
  NX810_RS11950 (NX810_11950) dnaD 2310309..2311007 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=722136 NX810_RS11930 WP_004399067.1 2305678..2306298(+) (recU) [Bacillus subtilis strain SRCM117108]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=722136 NX810_RS11930 WP_004399067.1 2305678..2306298(+) (recU) [Bacillus subtilis strain SRCM117108]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1