Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NT399_RS15910 Genome accession   NZ_CP103338
Coordinates   3324521..3324994 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3319521..3329994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS15895 (NT399_15895) pilX 3322150..3322968 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NT399_RS15900 (NT399_15900) pilW 3322965..3323966 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NT399_RS15905 (NT399_15905) pilV 3323967..3324527 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NT399_RS15910 (NT399_15910) fimU 3324521..3324994 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NT399_RS15915 (NT399_15915) ispH 3325164..3326114 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NT399_RS15920 (NT399_15920) gmk 3326237..3326866 (+) 630 WP_000015937.1 guanylate kinase -
  NT399_RS15925 (NT399_15925) rpoZ 3326939..3327217 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NT399_RS15930 (NT399_15930) - 3327256..3327386 (+) 131 Protein_3097 hypothetical protein -
  NT399_RS15935 (NT399_15935) - 3327426..3329531 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=722082 NT399_RS15910 WP_001214065.1 3324521..3324994(-) (fimU) [Acinetobacter baumannii strain AB105]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=722082 NT399_RS15910 WP_001214065.1 3324521..3324994(-) (fimU) [Acinetobacter baumannii strain AB105]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1