Detailed information NTG0722051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NT399_RS01555
• Genome accession: NZ_CP103338
• Coordinates: 317931..318791 (-)
• Length: 286 a.a.
• NCBI ID: WP_133238378.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB105
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 312931..323791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NT399_RS01530 (NT399_01530)	-	313822..315132 (+)	1311	WP_000753283.1	tetratricopeptide repeat protein	-
NT399_RS01535 (NT399_01535)	-	315209..315535 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
NT399_RS01540 (NT399_01540)	rlmB	315637..316386 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NT399_RS01545 (NT399_01545)	-	316422..317336 (+)	915	WP_004737922.1	DMT family transporter	-
NT399_RS01550 (NT399_01550)	coaE	317333..317929 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
NT399_RS01555 (NT399_01555)	pilD	317931..318791 (-)	861	WP_133238378.1	A24 family peptidase	Machinery gene
NT399_RS01560 (NT399_01560)	pilC	318791..320017 (-)	1227	WP_004737924.1	type II secretion system F family protein	Machinery gene
NT399_RS01565 (NT399_01565)	pilB	320047..321759 (-)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NT399_RS01570 (NT399_01570)	tpiA	322050..322844 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
NT399_RS01575 (NT399_01575)	secG	322857..323186 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32116.58 Da
• Isoelectric Point: 7.1041

>NTDB_id=722051 NT399_RS01555 WP_133238378.1 317931..318791(-) (pilD) [Acinetobacter baumannii strain AB105]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=722051 NT399_RS01555 WP_133238378.1 317931..318791(-) (pilD) [Acinetobacter baumannii strain AB105]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441