Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NX062_RS15830 Genome accession   NZ_CP103328
Coordinates   2959004..2959648 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain KC14-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2954004..2964648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS15795 (NX062_15805) mrpB 2955194..2955625 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  NX062_RS15800 (NX062_15810) mrpC 2955625..2955966 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NX062_RS15805 (NX062_15815) mrpD 2955959..2957440 (+) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  NX062_RS15810 (NX062_15820) mrpE 2957446..2957922 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NX062_RS15815 (NX062_15825) mrpF 2957922..2958206 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NX062_RS15820 (NX062_15830) mnhG 2958190..2958564 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NX062_RS15825 (NX062_15835) yuxO 2958605..2958985 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  NX062_RS15830 (NX062_15840) comA 2959004..2959648 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NX062_RS15835 (NX062_15845) - 2959729..2962034 (-) 2306 Protein_3053 histidine kinase -
  NX062_RS15840 (NX062_15850) comX 2962042..2962203 (-) 162 WP_003241045.1 competence pheromone ComX -
  NX062_RS15845 (NX062_15855) - 2962218..2963078 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  NX062_RS15850 (NX062_15860) degQ 2963263..2963403 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NX062_RS15855 (NX062_15865) - 2963625..2963750 (+) 126 WP_120028613.1 hypothetical protein -
  NX062_RS15860 (NX062_15870) - 2963865..2964233 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=722004 NX062_RS15830 WP_003220716.1 2959004..2959648(-) (comA) [Bacillus subtilis strain KC14-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=722004 NX062_RS15830 WP_003220716.1 2959004..2959648(-) (comA) [Bacillus subtilis strain KC14-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1