Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EL334_RS11710 Genome accession   NZ_AP019192
Coordinates   2155401..2156159 (+) Length   252 a.a.
NCBI ID   WP_033705077.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2150401..2161159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS11680 (ASP0581_21560) comE 2150998..2151750 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  EL334_RS11685 (ASP0581_21570) comD/comD1 2151747..2153072 (-) 1326 WP_033705078.1 competence system sensor histidine kinase ComD Regulator
  EL334_RS11690 (ASP0581_21580) comC/comC1 2153093..2153218 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  EL334_RS11700 (ASP0581_21590) rlmH 2153500..2153979 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EL334_RS11705 (ASP0581_21600) htrA 2154162..2155343 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  EL334_RS11710 (ASP0581_21610) spo0J 2155401..2156159 (+) 759 WP_033705077.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29136.51 Da        Isoelectric Point: 8.2609

>NTDB_id=72186 EL334_RS11710 WP_033705077.1 2155401..2156159(+) (spo0J) [Streptococcus pneumoniae strain ASP0581]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLLSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=72186 EL334_RS11710 WP_033705077.1 2155401..2156159(+) (spo0J) [Streptococcus pneumoniae strain ASP0581]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACTGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment