Detailed information NTG0721843

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NX761_RS09615
• Genome accession: NZ_CP103306
• Coordinates: 2016647..2017507 (-)
• Length: 286 a.a.
• NCBI ID: WP_046850015.1
• Uniprot ID: A0A0F7KGJ7
• Organism: Nitrosomonas sp. PLL12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2011647..2022507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NX761_RS09585 (NX761_09585)	argJ	2011815..2013044 (+)	1230	WP_046850010.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
NX761_RS09590 (NX761_09590)	-	2013051..2013938 (+)	888	WP_046850011.1	ATP-binding protein	-
NX761_RS09595 (NX761_09595)	-	2013957..2014907 (+)	951	WP_046850012.1	Nudix family hydrolase	-
NX761_RS09600 (NX761_09600)	-	2014950..2015150 (-)	201	WP_082110395.1	DNA gyrase inhibitor YacG	-
NX761_RS09605 (NX761_09605)	zapD	2015163..2015918 (-)	756	WP_046850013.1	cell division protein ZapD	-
NX761_RS09610 (NX761_09610)	coaE	2016023..2016643 (-)	621	WP_046850014.1	dephospho-CoA kinase	-
NX761_RS09615 (NX761_09615)	pilD	2016647..2017507 (-)	861	WP_046850015.1	A24 family peptidase	Machinery gene
NX761_RS09620 (NX761_09620)	pilC	2017540..2018763 (-)	1224	WP_046850016.1	type II secretion system F family protein	Machinery gene
NX761_RS09625 (NX761_09625)	-	2019055..2019963 (-)	909	WP_046850017.1	SDR family oxidoreductase	-
NX761_RS09630 (NX761_09630)	-	2020008..2021051 (+)	1044	WP_046850018.1	CDP-6-deoxy-delta-3,4-glucoseen reductase	-
NX761_RS09635 (NX761_09635)	-	2021054..2022232 (-)	1179	WP_046850019.1	heme biosynthesis protein HemY	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32027.88 Da
• Isoelectric Point: 8.0540

>NTDB_id=721843 NX761_RS09615 WP_046850015.1 2016647..2017507(-) (pilD) [Nitrosomonas sp. PLL12]
MTLTDSLQHSSAIFIAFSTIIGIIVGSFLNVVIYRLPRMMERAWHQQCAELRGENIHHSPVFNLVIPRSTCPQCEHRITV
LENIPLISYLFLKGYCSQCNTRISLRYPIVEGFTGIMSGFTAWHFGFGLTTIAALLFIWAMIALTFIDLESQLLPDTITL
PLLWIGLLFNLDNGFIEIRSAIIGTVAGYLVLWTIYWGFKLITGKEGMGYGDFKLLAAIGAWLGWQMLPLVILFSSFAGG
VISFILIITNKFQRNTTIPFGPYLAAGGLIALFWGNKINHAYFGLF

Nucleotide

• Length: 861 bp

>NTDB_id=721843 NX761_RS09615 WP_046850015.1 2016647..2017507(-) (pilD) [Nitrosomonas sp. PLL12]
ATGACATTAACCGATTCTCTTCAGCATTCATCGGCAATTTTTATCGCTTTTAGCACTATCATTGGAATAATAGTGGGTAG
TTTTTTGAATGTAGTCATTTACCGGCTTCCCAGAATGATGGAACGAGCATGGCACCAACAATGTGCTGAATTACGGGGAG
AGAATATTCATCATTCACCGGTTTTCAATCTGGTCATACCTCGCTCTACTTGCCCTCAATGTGAGCATAGAATTACCGTA
CTCGAAAATATTCCCCTCATCAGTTATTTATTCCTAAAAGGATACTGTTCACAATGCAATACGCGTATTTCCCTTCGCTA
CCCCATTGTCGAAGGATTTACAGGCATTATGAGCGGCTTTACGGCATGGCACTTCGGATTTGGCTTGACTACTATCGCCG
CCTTGTTGTTTATTTGGGCGATGATTGCCCTTACCTTTATCGATTTGGAGAGCCAATTATTACCCGATACGATTACATTA
CCTTTACTCTGGATCGGGCTTTTATTTAATCTGGATAATGGTTTTATTGAAATTCGATCAGCTATTATAGGCACAGTTGC
CGGTTATCTTGTTCTATGGACTATTTATTGGGGATTCAAACTGATTACGGGCAAAGAAGGAATGGGTTATGGTGATTTCA
AATTACTCGCCGCAATTGGTGCATGGCTAGGCTGGCAAATGTTACCATTAGTCATTCTATTTTCCTCATTTGCAGGAGGA
GTTATTAGTTTCATATTGATAATTACCAATAAATTTCAAAGAAATACTACCATTCCATTTGGCCCCTATCTTGCTGCCGG
AGGTTTGATTGCCTTATTCTGGGGGAATAAGATTAATCACGCTTACTTTGGTTTATTTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-242)

3D structure

• AlphaFold DB: A0A0F7KGJ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.364	96.154	0.504
pilD	Vibrio campbellii strain DS40M4	50	98.601	0.493
pilD	Acinetobacter nosocomialis M2	46.619	98.252	0.458
pilD	Acinetobacter baumannii D1279779	45.714	97.902	0.448
pilD	Neisseria gonorrhoeae MS11	45.802	91.608	0.42