Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NX720_RS21105 Genome accession   NZ_CP103300
Coordinates   5208026..5208901 (-) Length   291 a.a.
NCBI ID   WP_262597273.1    Uniprot ID   -
Organism   Endozoicomonas euniceicola strain EF212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5203026..5213901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX720_RS21090 (NX720_21090) - 5203749..5205659 (-) 1911 WP_262597269.1 lipopolysaccharide assembly protein LapB -
  NX720_RS21095 (NX720_21095) - 5205781..5207421 (+) 1641 WP_262597271.1 NAD+ synthase -
  NX720_RS21100 (NX720_21100) coaE 5207427..5208029 (-) 603 WP_262597272.1 dephospho-CoA kinase -
  NX720_RS21105 (NX720_21105) pilD 5208026..5208901 (-) 876 WP_262597273.1 A24 family peptidase Machinery gene
  NX720_RS21110 (NX720_21110) - 5209075..5209638 (-) 564 WP_262597274.1 hypothetical protein -
  NX720_RS21115 (NX720_21115) - 5209641..5211359 (-) 1719 WP_262597276.1 phosphatidylinositol 4-kinase -
  NX720_RS21120 (NX720_21120) - 5211411..5212226 (-) 816 WP_262597277.1 aldo/keto reductase -
  NX720_RS21125 (NX720_21125) - 5212285..5213748 (-) 1464 WP_262597278.1 hypothetical protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32145.59 Da        Isoelectric Point: 7.1981

>NTDB_id=721824 NX720_RS21105 WP_262597273.1 5208026..5208901(-) (pilD) [Endozoicomonas euniceicola strain EF212]
MLLPEFLQASPGCFLLALTLLGLIVGSFLNVVILRLPIMMERQWKLECLEALHPDKVPENPIKYNLATPGSNCMECGYRI
RPWENIPVLSYLFLKGQCSHCKTPISIRYPLIEIISATLAVVSGIVFGASTTTLFVCLLAWALLTLTVIDLDTQLLPDSI
TLPLLWLGLLVNTQHLFVPLTDAVFGAVAGYLSLWLVYWGFKLATGKEGMGYGDFKLLAALGAWLGWQMLPLIILLSSLV
GTLAGVGLMIFKKHNREQPIPFGPYLAAAGFFALLWGNTLIEFYLQIMGMK

Nucleotide


Download         Length: 876 bp        

>NTDB_id=721824 NX720_RS21105 WP_262597273.1 5208026..5208901(-) (pilD) [Endozoicomonas euniceicola strain EF212]
ATGCTACTTCCTGAATTTCTGCAAGCTTCACCCGGTTGTTTTTTATTAGCCTTAACCCTGCTCGGCCTGATTGTTGGCAG
CTTTCTGAATGTGGTGATTCTGCGTCTGCCGATCATGATGGAAAGACAGTGGAAGCTTGAATGCCTGGAAGCCCTGCATC
CGGATAAAGTACCGGAAAACCCGATAAAATATAATCTGGCCACACCGGGTTCAAATTGCATGGAGTGCGGATACAGGATT
CGTCCCTGGGAAAACATCCCGGTACTGAGCTACCTGTTCCTGAAAGGTCAGTGCTCCCACTGCAAAACCCCTATTTCCAT
TCGCTACCCATTGATTGAGATCATCAGCGCCACTCTTGCAGTGGTGTCTGGAATCGTCTTTGGCGCATCAACAACCACCT
TGTTCGTCTGTCTTCTGGCATGGGCATTACTGACACTGACGGTTATTGACCTGGATACTCAGCTGCTGCCCGACAGCATC
ACCCTGCCCCTGCTCTGGCTGGGCCTGCTGGTAAATACTCAACATCTGTTTGTCCCTCTGACTGATGCGGTGTTTGGTGC
CGTGGCGGGCTACCTGTCGTTATGGCTGGTTTACTGGGGCTTCAAGCTGGCTACCGGCAAGGAAGGTATGGGCTATGGCG
ACTTTAAACTGCTGGCGGCACTGGGAGCCTGGCTGGGCTGGCAGATGCTGCCTCTGATCATTCTGCTGTCATCCCTGGTG
GGAACACTGGCAGGGGTTGGCCTGATGATTTTCAAAAAACACAACCGCGAACAGCCGATTCCTTTTGGCCCTTATCTTGC
CGCAGCGGGTTTTTTTGCATTGTTATGGGGTAACACCCTGATTGAGTTTTATCTGCAAATAATGGGAATGAAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(138-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.482

96.907

0.509
  pilD Vibrio campbellii strain DS40M4

50.355

96.907

0.488
  pilD Acinetobacter nosocomialis M2

50.741

92.784

0.471
  pilD Acinetobacter baumannii D1279779

50.741

92.784

0.471
  pilD Neisseria gonorrhoeae MS11

50.593

86.942

0.44