Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   PVK48_RS07540 Genome accession   NZ_CP118307
Coordinates   1463349..1464383 (-) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20200554     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458349..1469383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK48_RS07500 (PVK48_07445) - 1458675..1458830 (-) 156 WP_002988678.1 hypothetical protein -
  PVK48_RS07505 (PVK48_07450) - 1459105..1459506 (+) 402 WP_011285676.1 helix-turn-helix domain-containing protein -
  PVK48_RS07510 (PVK48_07455) - 1459520..1459903 (+) 384 WP_002988673.1 ImmA/IrrE family metallo-endopeptidase -
  PVK48_RS07515 (PVK48_07460) - 1459914..1460465 (+) 552 WP_002988670.1 hypothetical protein -
  PVK48_RS07520 (PVK48_07465) - 1460582..1461661 (+) 1080 WP_002988667.1 site-specific integrase -
  PVK48_RS07530 (PVK48_07475) trmB 1461859..1462494 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PVK48_RS07535 (PVK48_07480) ccrZ 1462494..1463285 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  PVK48_RS07540 (PVK48_07485) pptB 1463349..1464383 (-) 1035 WP_002988663.1 ABC transporter permease Regulator
  PVK48_RS07545 (PVK48_07490) pptA 1464386..1465111 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  PVK48_RS07550 (PVK48_07495) - 1465183..1465602 (+) 420 WP_002988659.1 HIT family protein -
  PVK48_RS07555 (PVK48_07500) - 1465599..1465955 (+) 357 WP_002988657.1 hypothetical protein -
  PVK48_RS07560 (PVK48_07505) brpA 1466066..1467346 (-) 1281 WP_002988654.1 biofilm formation/cell division transcriptional regulator BrpA -
  PVK48_RS07565 (PVK48_07510) - 1467355..1467879 (-) 525 WP_002988650.1 GNAT family N-acetyltransferase -
  PVK48_RS07570 (PVK48_07515) tsaE 1467854..1468315 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=721757 PVK48_RS07540 WP_002988663.1 1463349..1464383(-) (pptB) [Streptococcus pyogenes strain 20200554]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=721757 PVK48_RS07540 WP_002988663.1 1463349..1464383(-) (pptB) [Streptococcus pyogenes strain 20200554]
ATGAAAGCATTATTTCTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427