Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NWE71_RS17065 Genome accession   NZ_CP103291
Coordinates   3545629..3546099 (-) Length   156 a.a.
NCBI ID   WP_258831470.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain NS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3540629..3551099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE71_RS17005 - 3540871..3540999 (-) 129 WP_258831458.1 hypothetical protein -
  NWE71_RS17010 - 3541052..3541183 (-) 132 WP_258831459.1 hypothetical protein -
  NWE71_RS17015 - 3541214..3541420 (-) 207 WP_258831460.1 hypothetical protein -
  NWE71_RS17020 - 3541491..3541994 (-) 504 WP_258831461.1 hypothetical protein -
  NWE71_RS17025 - 3542275..3542709 (-) 435 WP_258831462.1 hypothetical protein -
  NWE71_RS17030 - 3542741..3543223 (-) 483 WP_258831463.1 hypothetical protein -
  NWE71_RS17035 - 3543256..3543657 (-) 402 WP_258831464.1 hypothetical protein -
  NWE71_RS17040 - 3543654..3543833 (-) 180 WP_258831465.1 hypothetical protein -
  NWE71_RS17045 - 3543852..3544343 (-) 492 WP_258831466.1 hypothetical protein -
  NWE71_RS17050 - 3544340..3544480 (-) 141 WP_258831467.1 hypothetical protein -
  NWE71_RS17055 - 3544473..3544805 (-) 333 WP_258831468.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  NWE71_RS17060 - 3544806..3545618 (-) 813 WP_258831469.1 hypothetical protein -
  NWE71_RS17065 ssbA 3545629..3546099 (-) 471 WP_258831470.1 single-stranded DNA-binding protein Machinery gene
  NWE71_RS17070 - 3546264..3546758 (-) 495 WP_258831471.1 HNH endonuclease -
  NWE71_RS17075 - 3546758..3547675 (-) 918 WP_258831472.1 hypothetical protein -
  NWE71_RS17080 - 3547708..3547977 (-) 270 WP_258831473.1 hypothetical protein -
  NWE71_RS17085 - 3548115..3548381 (-) 267 WP_258831474.1 hypothetical protein -
  NWE71_RS17090 - 3548387..3548695 (-) 309 WP_258831475.1 hypothetical protein -
  NWE71_RS17095 - 3548713..3549537 (-) 825 WP_258831476.1 ATP-binding protein -
  NWE71_RS17100 - 3549497..3550267 (-) 771 WP_258831477.1 phage replisome organizer N-terminal domain-containing protein -
  NWE71_RS17105 - 3550368..3550982 (-) 615 WP_258831478.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17143.94 Da        Isoelectric Point: 4.7921

>NTDB_id=721729 NWE71_RS17065 WP_258831470.1 3545629..3546099(-) (ssbA) [Peribacillus frigoritolerans strain NS1]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRPFKNAAGEQEADFINVVVWRKPAENAANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSQKTDGNSQGNTNTSGSKQNSSQGDYTKVDDDPFANDGKTIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=721729 NWE71_RS17065 WP_258831470.1 3545629..3546099(-) (ssbA) [Peribacillus frigoritolerans strain NS1]
ATGATGAATCGAGTTGTATTAGTTGGAAGGCTAACAAAAGATCCGGAGTTACGTTATACACCAAATGGAGTGCCGGTGGC
TACTTTTACATTAGCTGTTAATCGTCCATTCAAAAACGCAGCCGGTGAACAAGAAGCTGATTTCATAAACGTTGTAGTTT
GGAGAAAGCCGGCAGAAAACGCGGCCAACTTTTTAAAGAAGGGCTCACTTGCTGGAGTAGACGGAAGAGTTCAAACACGT
AACTATGAAGGCCAAGACGGGAAAAGAGTCTATGTAACTGAAATACTAGCTGAATCAGTACAGTTTTTAGAGCCTAGGAG
CCAGAAAACAGACGGGAACAGTCAAGGGAATACAAATACATCAGGAAGCAAACAAAACAGCTCACAGGGCGATTATACAA
AGGTAGATGATGACCCATTCGCCAATGATGGAAAGACTATCGATATTTCGGATGACGACTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.718
  ssb Latilactobacillus sakei subsp. sakei 23K

57.558

100

0.635
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

67.949

0.423
  ssbA Streptococcus mutans UA159

39.103

100

0.391
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

69.872

0.372