Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PVK49_RS08995 Genome accession   NZ_CP118306
Coordinates   1810033..1811139 (+) Length   368 a.a.
NCBI ID   WP_009880735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805033..1816139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS08975 (PVK49_08960) hasA 1805711..1806970 (+) 1260 WP_047236069.1 hyaluronan synthase HasA -
  PVK49_RS08980 (PVK49_08965) hasB 1807006..1808214 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  PVK49_RS08985 (PVK49_08970) hasC 1808396..1809310 (+) 915 WP_011018342.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  PVK49_RS08990 (PVK49_08975) yaaA 1809618..1810031 (+) 414 WP_047236070.1 S4 domain-containing protein YaaA -
  PVK49_RS08995 (PVK49_08980) recF 1810033..1811139 (+) 1107 WP_009880735.1 DNA replication/repair protein RecF Machinery gene
  PVK49_RS09000 (PVK49_08985) - 1811195..1812058 (-) 864 WP_023611235.1 GRP family sugar transporter -
  PVK49_RS09005 (PVK49_08990) guaB 1812261..1813742 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  PVK49_RS09010 (PVK49_08995) trpS 1814050..1815072 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41825.74 Da        Isoelectric Point: 7.8294

>NTDB_id=721684 PVK49_RS08995 WP_009880735.1 1810033..1811139(+) (recF) [Streptococcus pyogenes strain 20154608]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=721684 PVK49_RS08995 WP_009880735.1 1810033..1811139(+) (recF) [Streptococcus pyogenes strain 20154608]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTAACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGCCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTTCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465