Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NXY85_RS13495 Genome accession   NZ_CP103290
Coordinates   2642720..2643409 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain NS2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637720..2648409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS13460 - 2637899..2638381 (-) 483 WP_088118069.1 flagellar protein FlgN -
  NXY85_RS13465 flgM 2638397..2638657 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  NXY85_RS13470 - 2638737..2639156 (-) 420 WP_258728219.1 TIGR03826 family flagellar region protein -
  NXY85_RS13475 comFC 2639228..2639950 (-) 723 WP_258728220.1 double zinc ribbon domain-containing protein Machinery gene
  NXY85_RS13480 - 2639914..2640210 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  NXY85_RS13485 comFA 2640267..2641664 (-) 1398 WP_258728221.1 ATP-dependent helicase ComFA Machinery gene
  NXY85_RS13490 - 2641771..2642613 (-) 843 WP_003326716.1 DegV family protein -
  NXY85_RS13495 degU 2642720..2643409 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NXY85_RS13500 degS 2643486..2644649 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  NXY85_RS13505 - 2644867..2645520 (+) 654 WP_003326713.1 YigZ family protein -
  NXY85_RS13510 - 2645520..2646743 (+) 1224 WP_088118072.1 LCP family protein -
  NXY85_RS13515 - 2646836..2647912 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=721682 NXY85_RS13495 WP_003219701.1 2642720..2643409(-) (degU) [Bacillus atrophaeus strain NS2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=721682 NXY85_RS13495 WP_003219701.1 2642720..2643409(-) (degU) [Bacillus atrophaeus strain NS2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGCAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1