Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NXY85_RS13475 Genome accession   NZ_CP103290
Coordinates   2639228..2639950 (-) Length   240 a.a.
NCBI ID   WP_258728220.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2634228..2644950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS13440 fliW 2634371..2634802 (-) 432 WP_150224534.1 flagellar assembly protein FliW -
  NXY85_RS13445 - 2634837..2635403 (-) 567 WP_106033809.1 DUF6470 family protein -
  NXY85_RS13450 flgL 2635451..2636347 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  NXY85_RS13455 flgK 2636359..2637882 (-) 1524 WP_088118068.1 flagellar hook-associated protein FlgK -
  NXY85_RS13460 - 2637899..2638381 (-) 483 WP_088118069.1 flagellar protein FlgN -
  NXY85_RS13465 flgM 2638397..2638657 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  NXY85_RS13470 - 2638737..2639156 (-) 420 WP_258728219.1 TIGR03826 family flagellar region protein -
  NXY85_RS13475 comFC 2639228..2639950 (-) 723 WP_258728220.1 double zinc ribbon domain-containing protein Machinery gene
  NXY85_RS13480 - 2639914..2640210 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  NXY85_RS13485 comFA 2640267..2641664 (-) 1398 WP_258728221.1 ATP-dependent helicase ComFA Machinery gene
  NXY85_RS13490 - 2641771..2642613 (-) 843 WP_003326716.1 DegV family protein -
  NXY85_RS13495 degU 2642720..2643409 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NXY85_RS13500 degS 2643486..2644649 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27552.72 Da        Isoelectric Point: 8.5583

>NTDB_id=721680 NXY85_RS13475 WP_258728220.1 2639228..2639950(-) (comFC) [Bacillus atrophaeus strain NS2]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKRQLQRITGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYLYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTAYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
GRPIIHSLTRLDNEKQSKKNKAERLLFKRVFDTEINSVGDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=721680 NXY85_RS13475 WP_258728220.1 2639228..2639950(-) (comFC) [Bacillus atrophaeus strain NS2]
TTGTGTGACGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAGACAATTACAAAGGATCACAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATTTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGTATCGGAATTTTCAACTGCCTATCCTGAAAAAAGCTATG
TGCTCATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTA
GGCCGGCCCATCATTCATTCCCTAACCCGTTTGGATAATGAAAAACAATCCAAGAAAAACAAAGCGGAACGGCTCCTTTT
CAAACGTGTTTTTGATACTGAAATCAATTCCGTTGGAGATATGGATGTCATATTAATCGATGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

65.833

100

0.658