Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   NXY85_RS11620 Genome accession   NZ_CP103290
Coordinates   2252076..2252219 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247076..2257219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS11595 - 2247427..2247807 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  NXY85_RS11600 comA 2247825..2248466 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  NXY85_RS11605 - 2248547..2250844 (-) 2298 Protein_2292 histidine kinase -
  NXY85_RS11610 comX 2250855..2251019 (-) 165 WP_106046982.1 competence pheromone ComX -
  NXY85_RS11615 - 2251032..2251892 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  NXY85_RS11620 degQ 2252076..2252219 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  NXY85_RS11625 - 2252679..2253038 (+) 360 WP_063637895.1 hypothetical protein -
  NXY85_RS11630 - 2253057..2254289 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  NXY85_RS11635 - 2254427..2255893 (-) 1467 WP_088117879.1 nicotinate phosphoribosyltransferase -
  NXY85_RS11640 - 2255909..2256460 (-) 552 WP_003327145.1 cysteine hydrolase family protein -
  NXY85_RS11645 - 2256568..2256966 (-) 399 WP_003327144.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=721677 NXY85_RS11620 WP_003327149.1 2252076..2252219(-) (degQ) [Bacillus atrophaeus strain NS2]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=721677 NXY85_RS11620 WP_003327149.1 2252076..2252219(-) (degQ) [Bacillus atrophaeus strain NS2]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894