Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NXY85_RS11600 Genome accession   NZ_CP103290
Coordinates   2247825..2248466 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2242825..2253466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS11565 - 2244018..2244449 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  NXY85_RS11570 - 2244449..2244790 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  NXY85_RS11575 - 2244783..2246264 (+) 1482 WP_061669364.1 Na+/H+ antiporter subunit D -
  NXY85_RS11580 - 2246270..2246746 (+) 477 WP_094232698.1 Na+/H+ antiporter subunit E -
  NXY85_RS11585 - 2246746..2247030 (+) 285 WP_094232699.1 Na(+)/H(+) antiporter subunit F1 -
  NXY85_RS11590 mnhG 2247014..2247388 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  NXY85_RS11595 - 2247427..2247807 (-) 381 WP_199679676.1 hotdog fold thioesterase -
  NXY85_RS11600 comA 2247825..2248466 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  NXY85_RS11605 - 2248547..2250844 (-) 2298 Protein_2292 histidine kinase -
  NXY85_RS11610 comX 2250855..2251019 (-) 165 WP_106046982.1 competence pheromone ComX -
  NXY85_RS11615 - 2251032..2251892 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  NXY85_RS11620 degQ 2252076..2252219 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  NXY85_RS11625 - 2252679..2253038 (+) 360 WP_063637895.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=721676 NXY85_RS11600 WP_003327154.1 2247825..2248466(-) (comA) [Bacillus atrophaeus strain NS2]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=721676 NXY85_RS11600 WP_003327154.1 2247825..2248466(-) (comA) [Bacillus atrophaeus strain NS2]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATTGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901