Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NXY85_RS07445 Genome accession   NZ_CP103290
Coordinates   1496649..1497719 (-) Length   356 a.a.
NCBI ID   WP_258729501.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491649..1502719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS07400 tapA 1492184..1492885 (-) 702 WP_258729496.1 amyloid fiber anchoring/assembly protein TapA -
  NXY85_RS07405 - 1493147..1493470 (+) 324 WP_258729497.1 YqzG/YhdC family protein -
  NXY85_RS07410 - 1493517..1493696 (-) 180 WP_003325435.1 YqzE family protein -
  NXY85_RS07415 comGG 1493766..1494140 (-) 375 WP_258729498.1 competence type IV pilus minor pilin ComGG Machinery gene
  NXY85_RS07420 comGF 1494141..1494536 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  NXY85_RS07425 comGE 1494550..1494897 (-) 348 WP_258729499.1 competence type IV pilus minor pilin ComGE Machinery gene
  NXY85_RS07430 comGD 1494881..1495321 (-) 441 WP_106046743.1 competence type IV pilus minor pilin ComGD Machinery gene
  NXY85_RS07435 comGC 1495311..1495577 (-) 267 WP_047937532.1 competence type IV pilus major pilin ComGC Machinery gene
  NXY85_RS07440 comGB 1495625..1496662 (-) 1038 WP_258729500.1 competence type IV pilus assembly protein ComGB Machinery gene
  NXY85_RS07445 comGA 1496649..1497719 (-) 1071 WP_258729501.1 competence type IV pilus ATPase ComGA Machinery gene
  NXY85_RS07450 - 1498102..1499055 (-) 954 WP_258729502.1 magnesium transporter CorA family protein -
  NXY85_RS07455 - 1499177..1500525 (+) 1349 Protein_1489 hemolysin family protein -
  NXY85_RS07460 - 1500592..1501443 (-) 852 WP_258729504.1 STAS domain-containing protein -
  NXY85_RS07470 - 1501711..1502091 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NXY85_RS07475 - 1502329..1502574 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40417.65 Da        Isoelectric Point: 9.3603

>NTDB_id=721662 NXY85_RS07445 WP_258729501.1 1496649..1497719(-) (comGA) [Bacillus atrophaeus strain NS2]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQSGSLS
LKLKNGTVYLRMSTLPTINDESLVIRVLPQHNIPAIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLHSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIAAQRLVDLTCPFCENGCSSVYCRITRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=721662 NXY85_RS07445 WP_258729501.1 1496649..1497719(-) (comGA) [Bacillus atrophaeus strain NS2]
TTGGATACGATAGAAAAAACTAGCAGGACATTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGAATTGACCATGCATTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGGCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCGCAAAGTGGTTCACTTTCT
TTAAAGCTTAAAAATGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGCGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCCACGCTGCTATCCTTTTTAA
AGCACTCCCATGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTACATTCACTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACTAGAGATCAGGATGTCTTGCAGGTACA
GGTGAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTGAAGGCGATTTTGCGCCATGATCCAGACATGATTGTTCTGG
GGGAAATCAGGGATGCTGAAACAGCAAAAATCGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAATGAAATAGAGCAAACAGCGATTGC
GATAGCAGCCCAGCGATTAGTCGACTTAACCTGTCCATTTTGTGAAAACGGCTGTTCCTCTGTTTATTGCCGGATTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCCAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
CGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

87.64

100

0.876