Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EL334_RS08015 Genome accession   NZ_AP019192
Coordinates   1500204..1501436 (-) Length   410 a.a.
NCBI ID   WP_001863391.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495204..1506436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS07985 (ASP0581_15080) - 1495391..1496359 (+) 969 WP_033705283.1 NAD(P)/FAD-dependent oxidoreductase -
  EL334_RS07990 (ASP0581_15090) whiA 1496393..1497304 (-) 912 WP_033705285.1 DNA-binding protein WhiA -
  EL334_RS07995 (ASP0581_15100) - 1497301..1498278 (-) 978 WP_001231086.1 YvcK family protein -
  EL334_RS08000 (ASP0581_15110) rapZ 1498275..1499165 (-) 891 WP_000163033.1 RNase adapter RapZ -
  EL334_RS08005 (ASP0581_15120) - 1499217..1499597 (-) 381 WP_001140412.1 RidA family protein -
  EL334_RS08010 (ASP0581_15130) yihA 1499608..1500195 (-) 588 WP_033705287.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EL334_RS08015 (ASP0581_15140) clpX 1500204..1501436 (-) 1233 WP_001863391.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EL334_RS08025 (ASP0581_15150) - 1501638..1502144 (-) 507 WP_001864547.1 dihydrofolate reductase -
  EL334_RS08030 (ASP0581_15160) - 1502274..1502792 (-) 519 WP_000229874.1 Dps family protein -
  EL334_RS08035 (ASP0581_15170) - 1503376..1504632 (+) 1257 WP_000530084.1 ISL3 family transposase -
  EL334_RS08040 (ASP0581_15180) lytC 1504712..1506217 (-) 1506 WP_078133223.1 choline binding-anchored murein hydrolase LytC -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45740.31 Da        Isoelectric Point: 4.4775

>NTDB_id=72143 EL334_RS08015 WP_001863391.1 1500204..1501436(-) (clpX) [Streptococcus pneumoniae strain ASP0581]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDANSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=72143 EL334_RS08015 WP_001863391.1 1500204..1501436(-) (clpX) [Streptococcus pneumoniae strain ASP0581]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGCAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTAGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATTGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559

Multiple sequence alignment