Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   PUV55_RS07410 Genome accession   NZ_CP118165
Coordinates   1499008..1500258 (-) Length   416 a.a.
NCBI ID   WP_160429045.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494008..1505258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS07390 (PUV55_07390) pilB 1494478..1495863 (+) 1386 WP_160429046.1 GspE/PulE family protein Machinery gene
  PUV55_RS07395 (PUV55_07395) pilC 1495856..1497052 (+) 1197 WP_274358631.1 type II secretion system F family protein Machinery gene
  PUV55_RS07400 (PUV55_07400) - 1497049..1497717 (+) 669 WP_005711775.1 prepilin peptidase -
  PUV55_RS07405 (PUV55_07405) dapE 1497801..1498934 (+) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -
  PUV55_RS07410 (PUV55_07410) clpX 1499008..1500258 (-) 1251 WP_160429045.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  PUV55_RS07415 (PUV55_07415) clpP 1500265..1500846 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  PUV55_RS07420 (PUV55_07420) - 1500947..1501336 (+) 390 WP_005711765.1 SufE family protein -
  PUV55_RS07425 (PUV55_07425) - 1501414..1502076 (-) 663 WP_279428553.1 SLC13 family permease -
  PUV55_RS07430 (PUV55_07430) - 1502545..1503165 (+) 621 WP_015940024.1 L-threonylcarbamoyladenylate synthase -
  PUV55_RS07435 (PUV55_07435) rluB 1503335..1504354 (+) 1020 WP_016528555.1 23S rRNA pseudouridine(2605) synthase RluB -
  PUV55_RS07440 (PUV55_07440) - 1504667..1504930 (+) 264 Protein_1457 transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45805.51 Da        Isoelectric Point: 5.2866

>NTDB_id=721417 PUV55_RS07410 WP_160429045.1 1499008..1500258(-) (clpX) [Glaesserella parasuis strain XP11]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=721417 PUV55_RS07410 WP_160429045.1 1499008..1500258(-) (clpX) [Glaesserella parasuis strain XP11]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTGTCTGACAA
TAAAGAGAGTGAGGGCGTTGAGTTAGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCCGGTGAAGGGGTTCAGC
AAGCGTTGCTGAAATTGATTGAAGGCACTATTGCGAATATCAATCCACAGGGTGGACGCAAACACCCGAAACAAGAAACA
ATTCCAGTCGATACGTCTAAAATTCTCTTTATCTGCGGTGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
AAATACACAAGGCGGAATTGGCTTTAAAGCGGAATTGAAGAAAGATAAAGATCGTCAGGCACTCACTGAATTATTCAAAC
AAGTTGAGCCTGAAGATTTGGTAAAATTTGGTTTAATTCCCGAGTTAATCGGGCGTTTGCCTGTGATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTATTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.961

98.798

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.167

98.077

0.531