Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PUV55_RS04805 Genome accession   NZ_CP118165
Coordinates   985716..987545 (+) Length   609 a.a.
NCBI ID   WP_160441186.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980716..992545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS04780 (PUV55_04780) - 981570..982652 (+) 1083 WP_016528230.1 SEL1-like repeat protein -
  PUV55_RS04785 (PUV55_04785) - 982658..983440 (+) 783 WP_274360139.1 hypothetical protein -
  PUV55_RS04790 (PUV55_04790) - 983507..984502 (+) 996 WP_261550443.1 hypothetical protein -
  PUV55_RS04795 (PUV55_04795) dinR/lexA 984696..985325 (+) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  PUV55_RS04800 (PUV55_04800) cyaY 985408..985716 (+) 309 WP_012621496.1 iron donor protein CyaY -
  PUV55_RS04805 (PUV55_04805) recQ 985716..987545 (+) 1830 WP_160441186.1 ATP-dependent DNA helicase RecQ Machinery gene
  PUV55_RS04810 (PUV55_04810) ligA 987603..989630 (-) 2028 WP_160414302.1 NAD-dependent DNA ligase LigA -
  PUV55_RS04815 (PUV55_04815) zipA 989694..990512 (-) 819 WP_021114738.1 cell division protein ZipA -
  PUV55_RS04820 (PUV55_04820) cysZ 990621..991376 (+) 756 WP_016528236.1 sulfate transporter CysZ -
  PUV55_RS04830 (PUV55_04830) frdD 991695..992039 (-) 345 WP_005712720.1 fumarate reductase subunit FrdD -
  PUV55_RS04835 (PUV55_04835) frdC 992053..992445 (-) 393 WP_005712722.1 fumarate reductase subunit FrdC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69072.25 Da        Isoelectric Point: 7.5134

>NTDB_id=721400 PUV55_RS04805 WP_160441186.1 985716..987545(+) (recQ) [Glaesserella parasuis strain XP11]
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLINGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPSDYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=721400 PUV55_RS04805 WP_160441186.1 985716..987545(+) (recQ) [Glaesserella parasuis strain XP11]
ATGTCAGTTACACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGTAAAGATTGCTTGGTGATTATGACAACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTGATTTCGCTAATGAAAGATCAGGTAGATCAA
CTGCTTATCAATGGTGTTGAAGCTGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCAGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCCAATTTTTTCCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCGGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCGCTGACTGCAACAGCAGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGCTAGAAGATCCCCACACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAGCTGATCAAATTTATCAGTAGTCAGCAAGGAAAAAGTGGTATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCACCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GGTACAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTTCGGATTATGGTTGGCTACACAAGGT
ATTACTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCGCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATTCCCCCTTACGTCGTTTTCAATGACGCTACCCTG
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGTTTGTGATTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(530-596)

DEAD/DEAH box helicase (DEAD)

(25-181)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

RecQ zinc-binding (RecQ_Zn_bind)

(346-400)

RQC domain (RQC)

(402-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.696

97.209

0.386