Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PUV55_RS04795 Genome accession   NZ_CP118165
Coordinates   984696..985325 (+) Length   209 a.a.
NCBI ID   WP_012621497.1    Uniprot ID   B8F317
Organism   Glaesserella parasuis strain XP11     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979696..990325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS04780 (PUV55_04780) - 981570..982652 (+) 1083 WP_016528230.1 SEL1-like repeat protein -
  PUV55_RS04785 (PUV55_04785) - 982658..983440 (+) 783 WP_274360139.1 hypothetical protein -
  PUV55_RS04790 (PUV55_04790) - 983507..984502 (+) 996 WP_261550443.1 hypothetical protein -
  PUV55_RS04795 (PUV55_04795) dinR/lexA 984696..985325 (+) 630 WP_012621497.1 transcriptional repressor LexA Regulator
  PUV55_RS04800 (PUV55_04800) cyaY 985408..985716 (+) 309 WP_012621496.1 iron donor protein CyaY -
  PUV55_RS04805 (PUV55_04805) recQ 985716..987545 (+) 1830 WP_160441186.1 ATP-dependent DNA helicase RecQ Machinery gene
  PUV55_RS04810 (PUV55_04810) ligA 987603..989630 (-) 2028 WP_160414302.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23212.60 Da        Isoelectric Point: 5.6315

>NTDB_id=721399 PUV55_RS04795 WP_012621497.1 984696..985325(+) (dinR/lexA) [Glaesserella parasuis strain XP11]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIVVDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=721399 PUV55_RS04795 WP_012621497.1 984696..985325(+) (dinR/lexA) [Glaesserella parasuis strain XP11]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGTATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCAGCAAACGATGAA
GAAGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACACCGATTGAAGCCATTGAACATATCGAAAAACATTATCCTGT
GAATGGGGCAATGTTCTCGCCAGCTGCCGATTATCTTCTTAAGGTGAATGGGAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACTAAATCTGTTCGTAATGGGCAAGTCGTTGTCGCCCGTGTTGATGATGAAGTC
ACCGTCAAACGCTTAGAGAAAAAAGGCGATTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTGTCGTCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCCGTGGGCGTTATTCGTAGTAATGCGTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F317

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.235

97.608

0.373