Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PUV55_RS00510 Genome accession   NZ_CP118165
Coordinates   113710..115548 (+) Length   612 a.a.
NCBI ID   WP_075592733.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108710..120548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS00480 (PUV55_00480) - 109338..109991 (-) 654 Protein_90 IS1595 family transposase -
  PUV55_RS00490 (PUV55_00490) sodA 110374..110994 (-) 621 WP_005714158.1 superoxide dismutase [Mn] -
  PUV55_RS00495 (PUV55_00495) modC 111212..112273 (-) 1062 WP_005714155.1 molybdenum ABC transporter ATP-binding protein ModC -
  PUV55_RS00500 (PUV55_00500) modB 112273..112974 (-) 702 WP_035491186.1 molybdate ABC transporter permease subunit -
  PUV55_RS00505 (PUV55_00505) pgsA 113129..113677 (+) 549 WP_005714153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PUV55_RS00510 (PUV55_00510) uvrC 113710..115548 (+) 1839 WP_075592733.1 excinuclease ABC subunit UvrC Machinery gene
  PUV55_RS00515 (PUV55_00515) htpX 115559..116410 (-) 852 WP_005714149.1 protease HtpX -
  PUV55_RS00520 (PUV55_00520) dinB 116516..117586 (-) 1071 WP_044009479.1 DNA polymerase IV -
  PUV55_RS00525 (PUV55_00525) - 117730..118638 (+) 909 WP_010787065.1 lysine exporter LysO family protein -
  PUV55_RS00530 (PUV55_00530) ampD 118631..119197 (-) 567 WP_005714146.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PUV55_RS00535 (PUV55_00535) - 119255..120094 (+) 840 WP_160428834.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69499.65 Da        Isoelectric Point: 8.8964

>NTDB_id=721386 PUV55_RS00510 WP_075592733.1 113710..115548(+) (uvrC) [Glaesserella parasuis strain XP11]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDSYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKMLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALDTFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=721386 PUV55_RS00510 WP_075592733.1 113710..115548(+) (uvrC) [Glaesserella parasuis strain XP11]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCAATCTTGCCAGCCGAA
AAACCGAAGCGTTGGTCTCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTCCGTGACGATAAATCTTACCCTTATATTTTGCTCAC
CAAACACCAACACCCACGTTTAGCCAGTTTTCGGGGGAGCAAAAAAATTGCTGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGAGAAACCTTAAATCTGCTCCAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAGCTACTACAAAAAC
CGTTCTCGTCCTTGTTTGCAGTATCAAATCGGGCGTTGCCTTGCCCCTTGCGTTGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATCGGTAAAATGG
AAAAAGCTGCGGAAGATCTGGATTTTGAAGCTGCTGCCCGTTTTCGAGATCAAATTCAGCAGATGCGAGTGGTCACTGAA
AAGCAATTTGTATCGAATGAACGTCTAGACGATCTCGATATTATTTCGATTGCCTACCAACACGGTATCGCTTGCGTACA
TATTCTGTTTGTACGACAAGGGAAAATGTTGGGTAGCCGAAGTTATTTCCCAAAAGTGCCGAACCATACCGAACTTGCCG
AATTGAGTGACACTTTTATCGGGCAATTCTATTTGCAGATGAACCAACATCGCACCATTCCGCATCAAATTATTATCGAT
CACTCCGTGAGCGAAGTGGACGCCTTAGAAAAGGTATTATCGGAACAAGCAGGGCATAAAGTGAGCATTACCGATAAAGT
GCGTGGTGAAAAAAGCCGTTATCTTGCGCTTGCCAAAACGAACGCAATGGCAGCATTGACCTTACAGCTCAAGCAAGATG
CTCGAATCCAAACCCGTTATGAAGCTTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACGGTCGCTTCTTGTGTGGTGTTTGATGAAAATGGACCGTTAAAATCCGACTATCGCCG
TTTCAACATTGAAGGTATTACAGGGGGCGATGATTATGCCGCAATGGAACAAGCCCTGCTCAAACGTTATGATAAACCGC
TACCGCCTGAAAAAATCCCTGATATTATTTTTATTGACGGCGGAAAAGGGCAGTTAAATCGAGCCTTAGACACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTCATCGGTGTGGCAAAAGGCGTAGAACGAAAAGCTGGGCTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACCTACCACCCGACAGCCCTGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGTGGTTTAGAGGCA
ATCGCTGGCGTTGGGGCTAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrB/uvrC motif (UVR)

(204-235)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.869

99.673

0.377
  uvrC Streptococcus pneumoniae R6

37.541

99.673

0.374
  uvrC Streptococcus pneumoniae D39

37.541

99.673

0.374