Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NV382_RS13490 Genome accession   NZ_CP103057
Coordinates   2859701..2860264 (-) Length   187 a.a.
NCBI ID   WP_260597248.1    Uniprot ID   -
Organism   Sphingomonas endolithica strain ZFBP2030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2854701..2865264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV382_RS13465 metX 2855489..2856637 (+) 1149 WP_260597244.1 homoserine O-acetyltransferase MetX -
  NV382_RS13470 - 2856634..2857071 (+) 438 WP_260597245.1 GNAT family N-acetyltransferase -
  NV382_RS13475 metW 2857068..2857655 (+) 588 WP_260597246.1 methionine biosynthesis protein MetW -
  NV382_RS13480 - 2857720..2858115 (+) 396 WP_260597247.1 response regulator -
  NV382_RS13485 - 2858133..2859656 (-) 1524 WP_260600414.1 sensor histidine kinase -
  NV382_RS13490 ssb 2859701..2860264 (-) 564 WP_260597248.1 single-stranded DNA-binding protein Machinery gene
  NV382_RS13495 feoB 2860291..2862156 (-) 1866 WP_260597249.1 ferrous iron transporter B -
  NV382_RS13500 - 2862176..2862442 (-) 267 WP_260597250.1 FeoA family protein -
  NV382_RS13505 - 2862534..2863199 (-) 666 WP_260597251.1 COQ9 family protein -
  NV382_RS13510 - 2863196..2864104 (-) 909 WP_260600415.1 DMT family transporter -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 18801.41 Da        Isoelectric Point: 5.2855

>NTDB_id=721238 NV382_RS13490 WP_260597248.1 2859701..2860264(-) (ssb) [Sphingomonas endolithica strain ZFBP2030]
MAGSVNKVIIVGNLGRDPESKSFQNGGKVVNLRIATSDSWKDKNTGERKEATEWHSVAIFNEGLANVAERYLRKGSKVYI
EGALKTRKWQDAQGQDKYSTEIVLQGFNSVLTMLDGPGGGAGGGGSASGGGFGGGARDDFGGGNDFGGGSGGGSAGGYGG
GRGGAGAGSGGGGRQSFADDLDDDVPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=721238 NV382_RS13490 WP_260597248.1 2859701..2860264(-) (ssb) [Sphingomonas endolithica strain ZFBP2030]
ATGGCGGGCAGCGTCAACAAGGTGATCATCGTCGGCAATCTCGGCCGCGATCCGGAAAGCAAGAGCTTCCAGAACGGCGG
CAAGGTGGTCAACCTGCGCATCGCCACGTCCGATTCGTGGAAGGACAAGAATACCGGCGAGCGCAAGGAAGCGACCGAAT
GGCATTCGGTGGCGATTTTCAACGAGGGCCTTGCCAATGTCGCCGAGCGCTATCTGCGCAAGGGCAGCAAGGTGTATATC
GAGGGCGCGCTCAAGACCCGCAAATGGCAGGATGCGCAGGGCCAGGATAAATATTCGACCGAGATCGTGCTGCAGGGCTT
CAACAGCGTCCTGACGATGCTCGATGGCCCCGGCGGCGGTGCAGGCGGTGGCGGCAGCGCGTCGGGCGGCGGCTTCGGTG
GCGGTGCGCGCGATGACTTTGGCGGCGGCAACGATTTTGGCGGCGGGTCCGGTGGCGGATCGGCCGGCGGCTATGGCGGT
GGTCGTGGCGGCGCAGGAGCGGGATCCGGCGGCGGCGGGCGGCAGAGCTTCGCCGATGATCTCGACGACGACGTTCCGTT
TTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.429

100

0.487
  ssb Vibrio cholerae strain A1552

46.448

97.861

0.455