Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NQK33_RS05800 Genome accession   NZ_CP103055
Coordinates   1147466..1148236 (-) Length   256 a.a.
NCBI ID   WP_002792199.1    Uniprot ID   A0A3K5JQQ7
Organism   Campylobacter coli strain YC3-24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1142466..1153236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQK33_RS05770 (NQK33_05770) aspS 1142601..1144352 (+) 1752 WP_057032542.1 aspartate--tRNA ligase -
  NQK33_RS05775 (NQK33_05775) - 1144349..1144924 (+) 576 WP_002781658.1 adenylate kinase -
  NQK33_RS05780 (NQK33_05780) ppa 1144935..1145453 (+) 519 WP_002776378.1 inorganic diphosphatase -
  NQK33_RS05785 (NQK33_05785) msrA 1145501..1146001 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  NQK33_RS05790 (NQK33_05790) - 1146224..1147078 (-) 855 WP_370658866.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  NQK33_RS05795 (NQK33_05795) ruvX 1147089..1147469 (-) 381 WP_002792200.1 Holliday junction resolvase RuvX -
  NQK33_RS05800 (NQK33_05800) dprA 1147466..1148236 (-) 771 WP_002792199.1 DNA-processing protein DprA Machinery gene
  NQK33_RS05805 (NQK33_05805) - 1148226..1149260 (-) 1035 WP_002825341.1 divergent polysaccharide deacetylase family protein -
  NQK33_RS05810 (NQK33_05810) ilvC 1149264..1150286 (-) 1023 WP_025398809.1 ketol-acid reductoisomerase -
  NQK33_RS05815 (NQK33_05815) - 1150409..1152343 (+) 1935 WP_258749822.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28775.19 Da        Isoelectric Point: 5.2497

>NTDB_id=721227 NQK33_RS05800 WP_002792199.1 1147466..1148236(-) (dprA) [Campylobacter coli strain YC3-24]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSAYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIIALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=721227 NQK33_RS05800 WP_002792199.1 1147466..1148236(-) (dprA) [Campylobacter coli strain YC3-24]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCGCTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTATCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTGCCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAA
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JQQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

48.333

93.75

0.453