Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NW905_RS07395 Genome accession   NZ_CP103054
Coordinates   1634830..1635465 (+) Length   211 a.a.
NCBI ID   WP_084942595.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain P33     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629830..1640465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW905_RS07375 (NW905_07375) - 1630084..1631016 (+) 933 WP_062573273.1 ABC transporter ATP-binding protein -
  NW905_RS07380 (NW905_07380) - 1631013..1631792 (+) 780 WP_062573274.1 ABC transporter permease -
  NW905_RS07385 (NW905_07385) - 1631676..1632317 (-) 642 WP_052896362.1 DUF2062 domain-containing protein -
  NW905_RS07390 (NW905_07390) comA 1632462..1634678 (+) 2217 WP_258800850.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW905_RS07395 (NW905_07395) exbB 1634830..1635465 (+) 636 WP_084942595.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NW905_RS07400 (NW905_07400) - 1635462..1635896 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  NW905_RS07405 (NW905_07405) lpxK 1635896..1636900 (+) 1005 WP_062573277.1 tetraacyldisaccharide 4'-kinase -
  NW905_RS07410 (NW905_07410) - 1636935..1637120 (+) 186 WP_011532874.1 Trm112 family protein -
  NW905_RS07415 (NW905_07415) kdsB 1637117..1637881 (+) 765 WP_096048370.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NW905_RS07420 (NW905_07420) - 1637881..1638345 (+) 465 WP_062573279.1 low molecular weight protein-tyrosine-phosphatase -
  NW905_RS07425 (NW905_07425) murB 1638342..1639361 (+) 1020 WP_062573280.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.17 Da        Isoelectric Point: 7.3616

>NTDB_id=721188 NW905_RS07395 WP_084942595.1 1634830..1635465(+) (exbB) [Pseudomonas mosselii strain P33]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=721188 NW905_RS07395 WP_084942595.1 1634830..1635465(+) (exbB) [Pseudomonas mosselii strain P33]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825