Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   NF399_RS08565 Genome accession   NZ_CP103049
Coordinates   1759366..1759941 (-) Length   191 a.a.
NCBI ID   WP_049389109.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain DSM 20326     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754366..1764941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF399_RS08530 - 1755156..1755293 (-) 138 WP_016898795.1 gallidermin family lantibiotic -
  NF399_RS08535 - 1756329..1756487 (+) 159 WP_016898796.1 hypothetical protein -
  NF399_RS08540 - 1756703..1757374 (+) 672 WP_002452899.1 Ltp family lipoprotein -
  NF399_RS12330 - 1757979..1758503 (+) 525 WP_016898797.1 Ltp family lipoprotein -
  NF399_RS08565 comK/comK1 1759366..1759941 (-) 576 WP_049389109.1 competence protein ComK Regulator
  NF399_RS08570 - 1760160..1760378 (+) 219 WP_002452896.1 IDEAL domain-containing protein -
  NF399_RS08575 - 1760458..1761444 (-) 987 WP_002452895.1 lipoate--protein ligase -
  NF399_RS08580 - 1761649..1761834 (+) 186 WP_002433441.1 YkvS family protein -
  NF399_RS08585 - 1761840..1762442 (+) 603 WP_016898798.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  NF399_RS08590 - 1762538..1764046 (-) 1509 WP_002452892.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22741.86 Da        Isoelectric Point: 9.5768

>NTDB_id=721177 NF399_RS08565 WP_049389109.1 1759366..1759941(-) (comK/comK1) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANSESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQLIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=721177 NF399_RS08565 WP_049389109.1 1759366..1759941(-) (comK/comK1) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGATATGTTAATTCGACCAAGGTATGATGAATATCAACA
AACTTCAGGGGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTACAAAGAATTATTGAAAGGT
CCTGCAAATTTTATGGTAATAGCTATCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACTCCATTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGTCAAGATGAAAACATCTGGATAAACAT
GCATTATATTGATAGCATCAAAGAACTAAAAAATCGTAAAAGTAAAGTGATATTTGCTAATAGTGAATCATTTATATTAA
ACGTTTCTTATCATAGCTTATGGCATCAATATACGAACGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAACCCAGAACAACTCATTGATTATAACCAATCATCGTTAAATATATTTGAAGCTCTTTCAAGGTATTCACT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.064

98.429

0.749
  comK/comK1 Staphylococcus aureus N315

76.064

98.429

0.749