Detailed information NTG0721170

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: NF399_RS06125
• Genome accession: NZ_CP103049
• Coordinates: 1237001..1237975 (+)
• Length: 324 a.a.
• NCBI ID: WP_103175541.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain DSM 20326
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1232001..1242975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF399_RS06090	rpmG	1232514..1232663 (+)	150	WP_002433802.1	50S ribosomal protein L33	-
NF399_RS06095	-	1232812..1233363 (+)	552	WP_029625710.1	5-formyltetrahydrofolate cyclo-ligase	-
NF399_RS06100	-	1233364..1234827 (+)	1464	WP_016898190.1	rhomboid family intramembrane serine protease	-
NF399_RS06105	-	1234808..1235011 (+)	204	WP_103175540.1	YqgQ family protein	-
NF399_RS06110	-	1235008..1235994 (+)	987	WP_002453336.1	ROK family glucokinase	-
NF399_RS06115	-	1235994..1236320 (+)	327	WP_002433945.1	MTH1187 family thiamine-binding protein	-
NF399_RS06120	-	1236320..1236943 (+)	624	WP_002453335.1	MBL fold metallo-hydrolase	-
NF399_RS06125	comGA	1237001..1237975 (+)	975	WP_103175541.1	competence type IV pilus ATPase ComGA	Machinery gene
NF399_RS06130	comGB	1237947..1239016 (+)	1070	Protein_1163	competence type IV pilus assembly protein ComGB	-
NF399_RS06135	comGC	1239035..1239346 (+)	312	WP_029625707.1	competence type IV pilus major pilin ComGC	Machinery gene
NF399_RS06140	comGD	1239324..1239773 (+)	450	WP_121909863.1	competence type IV pilus minor pilin ComGD	-
NF399_RS06145	-	1239760..1240059 (+)	300	WP_002453332.1	hypothetical protein	-
NF399_RS06150	-	1239977..1240381 (+)	405	WP_229716900.1	ComGF family competence protein	-
NF399_RS06155	-	1240638..1241147 (+)	510	WP_029625706.1	shikimate kinase	-
NF399_RS06160	gcvT	1241356..1242447 (+)	1092	WP_016898186.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37099.89 Da
• Isoelectric Point: 7.5012

>NTDB_id=721170 NF399_RS06125 WP_103175541.1 1237001..1237975(+) (comGA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MKMLFQEIVNYAIKHTASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAYQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTHELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT

Nucleotide

• Length: 975 bp

>NTDB_id=721170 NF399_RS06125 WP_103175541.1 1237001..1237975(+) (comGA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACACTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGCGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCTATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTTACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCATGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTTTCTAAGGAAGGAGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.279	99.691	0.701
comGA	Staphylococcus aureus N315	70.279	99.691	0.701