Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   NF399_RS01125 Genome accession   NZ_CP103049
Coordinates   254820..255716 (+) Length   298 a.a.
NCBI ID   WP_002454129.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain DSM 20326     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 249820..260716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF399_RS01100 - 250133..250234 (+) 102 WP_016898541.1 SE2200 family small protein -
  NF399_RS01105 - 250419..251961 (+) 1543 Protein_214 NAD(P)H-binding protein -
  NF399_RS01110 - 252155..253639 (-) 1485 WP_002454130.1 alkaline phosphatase -
  NF399_RS01115 - 253966..254118 (+) 153 WP_002436229.1 hypothetical protein -
  NF399_RS01120 braR 254149..254814 (+) 666 WP_002436233.1 response regulator transcription factor Regulator
  NF399_RS01125 braS 254820..255716 (+) 897 WP_002454129.1 sensor histidine kinase Regulator
  NF399_RS01130 - 255826..256575 (+) 750 WP_002436183.1 ABC transporter ATP-binding protein -
  NF399_RS01135 - 256577..258592 (+) 2016 WP_002454128.1 ABC transporter permease -
  NF399_RS01140 - 258817..259635 (+) 819 WP_064262697.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34585.90 Da        Isoelectric Point: 5.6334

>NTDB_id=721154 NF399_RS01125 WP_002454129.1 254820..255716(+) (braS) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MLLSFIKSIRNEITIIFCIFLLFALIFYLFSLPFSAFGLALGIVLLIIFIHWWVKYLGFKRNEDLKEKIDNLENELTEVK
NRQVEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVQIDNYTSLALSYLKLLNEESDMTITSVTVNEL
IRPLIMKYRIQFIEQHTKIHYEKCEATVLTDAQWASIMIEQILNNALKYARGKDIWIEFDSAKQTLIIKDNGVGISKADI
PKIFDKGYSGYNGRLNEESSGIGLFIVKHISNHLNHEVDVDSGLGEGTTFKIHFPNED

Nucleotide


Download         Length: 897 bp        

>NTDB_id=721154 NF399_RS01125 WP_002454129.1 254820..255716(+) (braS) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGTTGCTATCTTTTATAAAATCGATTCGAAATGAGATTACAATTATATTTTGTATATTTTTATTATTTGCATTAATATT
TTACTTATTTTCATTACCATTTAGTGCCTTCGGTCTTGCGTTAGGAATCGTATTACTCATCATTTTTATTCATTGGTGGG
TAAAGTACCTTGGATTTAAGAGAAATGAGGATCTTAAAGAGAAGATAGATAATTTGGAAAATGAATTAACTGAAGTAAAA
AATCGCCAAGTTGAATATCGTAATGATGTGGAAAGTTACTTTTTAACATGGGTACATCAAATTAAGACACCTATCACAGC
GTCACAACTATTACTCGAACGTAATGAAGAAAATGTTGTCAATCGCGTAAGACAAGAAATTGTTCAAATTGATAACTATA
CAAGCTTAGCATTGAGTTATTTAAAATTACTCAACGAAGAATCTGATATGACAATTACATCAGTGACAGTGAATGAATTA
ATACGTCCGCTAATCATGAAATATCGAATTCAGTTTATCGAACAACATACTAAAATTCACTATGAAAAGTGTGAAGCAAC
TGTTTTAACGGATGCACAATGGGCGTCTATTATGATAGAACAAATTTTAAATAATGCTTTGAAGTACGCGCGTGGAAAAG
ACATTTGGATTGAATTTGATTCTGCTAAACAAACATTAATCATTAAAGACAATGGTGTAGGTATTAGTAAAGCAGATATT
CCTAAAATATTTGATAAAGGCTATTCTGGTTACAACGGCAGACTTAATGAAGAATCAAGCGGCATAGGATTGTTCATTGT
TAAGCATATTTCTAATCATTTGAATCATGAGGTCGATGTAGATTCAGGACTTGGTGAAGGTACGACATTTAAAATACATT
TTCCCAACGAAGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

65.085

98.993

0.644