Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NV391_RS10920 Genome accession   NZ_CP103039
Coordinates   2159202..2159801 (+) Length   199 a.a.
NCBI ID   WP_057867043.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2154202..2164801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS10910 (NV391_10925) gyrA 2156139..2158664 (+) 2526 WP_057867041.1 DNA gyrase subunit A -
  NV391_RS10915 (NV391_10930) rpsF 2158868..2159164 (+) 297 WP_274764954.1 30S ribosomal protein S6 -
  NV391_RS10920 (NV391_10935) ssb 2159202..2159801 (+) 600 WP_057867043.1 single-stranded DNA-binding protein Machinery gene
  NV391_RS10925 (NV391_10940) rpsR 2159823..2160059 (+) 237 WP_057867044.1 30S ribosomal protein S18 -
  NV391_RS10930 (NV391_10945) - 2160333..2160554 (+) 222 WP_057867045.1 helix-turn-helix transcriptional regulator -
  NV391_RS10935 (NV391_10950) - 2160523..2161065 (+) 543 WP_274764955.1 DUF3278 domain-containing protein -
  NV391_RS10940 (NV391_10955) - 2161219..2163222 (+) 2004 WP_274764956.1 DHH family phosphoesterase -
  NV391_RS10945 (NV391_10960) rplI 2163241..2163696 (+) 456 WP_057867048.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21943.20 Da        Isoelectric Point: 4.9528

>NTDB_id=721147 NV391_RS10920 WP_057867043.1 2159202..2159801(+) (ssb) [Companilactobacillus crustorum strain X66]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFIGCTIWRKAAENFVNFTKKGSLVGIDGRIQTS
SYDNQQGQRVYRTDVIVENFSLLESRAESERRDSGSGNSNQASNYNNNSNQSNQSPFGNTNSNNNSYGNNSANNNSNYNN
SNNNSNNNNQSNNSNSNNNGDPFADKSKPIDISDDDLPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=721147 NV391_RS10920 WP_057867043.1 2159202..2159801(+) (ssb) [Companilactobacillus crustorum strain X66]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTGAGATATACTGCCAATGGTGCAGCAGTTGC
AAGTTTTACAGTTGCTGTTAACCGTCAGTTTACTAATTCACAGGGCGAACGTGAAGCTGATTTTATCGGTTGTACTATTT
GGAGAAAAGCTGCTGAGAATTTTGTTAATTTCACTAAGAAGGGTTCATTAGTTGGTATCGATGGACGTATTCAAACAAGT
TCATACGATAATCAACAAGGTCAAAGAGTCTACAGAACAGATGTTATTGTAGAAAACTTCTCCTTGCTTGAATCTCGAGC
TGAAAGTGAAAGAAGAGATTCTGGTAGCGGCAATTCCAATCAAGCATCAAACTACAACAATAATTCCAATCAATCAAATC
AGTCTCCGTTCGGAAATACTAACAGTAATAACAATAGTTATGGCAATAATAGTGCCAATAACAATAGTAATTACAATAAT
AGTAACAACAATTCAAATAACAATAATCAATCTAACAATTCTAACAGTAACAATAATGGCGATCCTTTTGCTGATAAAAG
CAAGCCGATTGACATTTCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.5

100

0.578
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.754

100

0.508