Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NV391_RS09220 | Genome accession | NZ_CP103039 |
| Coordinates | 1799507..1800022 (-) | Length | 171 a.a. |
| NCBI ID | WP_420869526.1 | Uniprot ID | - |
| Organism | Companilactobacillus crustorum strain X66 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1768405..1821187 | 1799507..1800022 | within | 0 |
Gene organization within MGE regions
Location: 1768405..1821187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV391_RS08995 (NV391_09010) | - | 1768405..1768770 (+) | 366 | WP_274764744.1 | winged helix-turn-helix transcriptional regulator | - |
| NV391_RS09000 (NV391_09015) | - | 1768753..1769085 (-) | 333 | WP_057867606.1 | helix-turn-helix domain-containing protein | - |
| NV391_RS09005 (NV391_09020) | - | 1769552..1770421 (-) | 870 | WP_057867652.1 | DegV family protein | - |
| NV391_RS09010 (NV391_09025) | - | 1771338..1772459 (-) | 1122 | WP_338078462.1 | GH25 family lysozyme | - |
| NV391_RS09015 (NV391_09030) | - | 1772456..1772746 (-) | 291 | WP_274764745.1 | holin | - |
| NV391_RS09020 (NV391_09035) | - | 1772733..1773059 (-) | 327 | WP_274764746.1 | hypothetical protein | - |
| NV391_RS09025 (NV391_09040) | - | 1773052..1773438 (-) | 387 | WP_274764747.1 | hypothetical protein | - |
| NV391_RS09030 (NV391_09045) | - | 1773475..1773606 (-) | 132 | WP_274764748.1 | XkdX family protein | - |
| NV391_RS09035 (NV391_09050) | - | 1773620..1774039 (-) | 420 | WP_274764749.1 | hypothetical protein | - |
| NV391_RS09040 (NV391_09055) | - | 1774050..1775321 (-) | 1272 | WP_274764750.1 | hypothetical protein | - |
| NV391_RS09045 (NV391_09060) | - | 1775332..1775613 (-) | 282 | WP_274764751.1 | hypothetical protein | - |
| NV391_RS09050 (NV391_09065) | - | 1775613..1776200 (-) | 588 | WP_274764752.1 | phage tail protein | - |
| NV391_RS09055 (NV391_09070) | - | 1776201..1776995 (-) | 795 | WP_274764753.1 | putative phage tail protein | - |
| NV391_RS09060 (NV391_09075) | - | 1776988..1778136 (-) | 1149 | WP_274764754.1 | baseplate J/gp47 family protein | - |
| NV391_RS09065 (NV391_09080) | - | 1778126..1778488 (-) | 363 | WP_338078463.1 | DUF2634 domain-containing protein | - |
| NV391_RS09070 (NV391_09085) | - | 1778490..1778834 (-) | 345 | WP_274764756.1 | DUF2577 domain-containing protein | - |
| NV391_RS09075 (NV391_09090) | - | 1778831..1779886 (-) | 1056 | WP_274764758.1 | XkdQ/YqbQ family protein | - |
| NV391_RS09080 (NV391_09095) | - | 1779883..1780572 (-) | 690 | WP_274764760.1 | hypothetical protein | - |
| NV391_RS09085 (NV391_09100) | - | 1780585..1783659 (-) | 3075 | WP_274764762.1 | tape measure protein | - |
| NV391_RS09090 (NV391_09105) | - | 1783891..1784304 (-) | 414 | WP_274764764.1 | phage tail assembly chaperone | - |
| NV391_RS09095 (NV391_09110) | - | 1784319..1784804 (-) | 486 | WP_274764765.1 | phage tail tube protein | - |
| NV391_RS09100 (NV391_09115) | - | 1784820..1786202 (-) | 1383 | WP_274764766.1 | phage tail sheath family protein | - |
| NV391_RS09105 (NV391_09120) | - | 1786205..1786363 (-) | 159 | WP_274764767.1 | hypothetical protein | - |
| NV391_RS09110 (NV391_09125) | - | 1786353..1786772 (-) | 420 | WP_274764768.1 | phage tail terminator family protein | - |
| NV391_RS09115 (NV391_09130) | - | 1786769..1787203 (-) | 435 | WP_274764769.1 | HK97 gp10 family phage protein | - |
| NV391_RS09120 (NV391_09135) | - | 1787184..1787582 (-) | 399 | WP_274764771.1 | hypothetical protein | - |
| NV391_RS09125 (NV391_09140) | - | 1787579..1787965 (-) | 387 | WP_274764772.1 | hypothetical protein | - |
| NV391_RS09130 (NV391_09145) | - | 1787976..1788098 (-) | 123 | WP_274764773.1 | hypothetical protein | - |
| NV391_RS09135 (NV391_09150) | - | 1788107..1789027 (-) | 921 | WP_274764774.1 | capsid protein | - |
| NV391_RS09140 (NV391_09155) | - | 1789034..1789588 (-) | 555 | WP_274764775.1 | phage scaffolding protein | - |
| NV391_RS09145 (NV391_09160) | - | 1789696..1790721 (-) | 1026 | WP_274764776.1 | minor capsid protein | - |
| NV391_RS09150 (NV391_09165) | - | 1790708..1792120 (-) | 1413 | WP_274764777.1 | phage portal protein | - |
| NV391_RS09155 (NV391_09170) | - | 1792102..1793367 (-) | 1266 | WP_274764778.1 | PBSX family phage terminase large subunit | - |
| NV391_RS09160 (NV391_09175) | - | 1793339..1794169 (-) | 831 | WP_274764779.1 | terminase small subunit | - |
| NV391_RS09165 (NV391_09180) | - | 1794204..1794332 (-) | 129 | WP_274764780.1 | hypothetical protein | - |
| NV391_RS09170 (NV391_09185) | - | 1794451..1795623 (-) | 1173 | WP_274764781.1 | XRE family transcriptional regulator | - |
| NV391_RS09175 (NV391_09190) | - | 1795644..1796378 (-) | 735 | WP_274764782.1 | hypothetical protein | - |
| NV391_RS09180 (NV391_09195) | - | 1796934..1797386 (-) | 453 | WP_274764783.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NV391_RS09185 (NV391_09200) | - | 1797540..1797776 (-) | 237 | WP_274764784.1 | hypothetical protein | - |
| NV391_RS09190 (NV391_09205) | - | 1797754..1797972 (-) | 219 | WP_274764785.1 | hypothetical protein | - |
| NV391_RS09195 (NV391_09210) | - | 1797976..1798191 (-) | 216 | WP_274764786.1 | hypothetical protein | - |
| NV391_RS09200 (NV391_09215) | - | 1798188..1798538 (-) | 351 | WP_274764787.1 | YopX family protein | - |
| NV391_RS09205 (NV391_09220) | - | 1798535..1798891 (-) | 357 | WP_274764788.1 | DUF1828 domain-containing protein | - |
| NV391_RS09210 (NV391_09225) | - | 1798964..1799185 (-) | 222 | WP_274764789.1 | hypothetical protein | - |
| NV391_RS09215 (NV391_09230) | - | 1799198..1799398 (-) | 201 | WP_274764790.1 | hypothetical protein | - |
| NV391_RS09220 (NV391_09235) | ssb | 1799507..1800022 (-) | 516 | WP_420869526.1 | single-stranded DNA-binding protein | Machinery gene |
| NV391_RS09225 (NV391_09240) | - | 1799988..1800197 (-) | 210 | WP_025025280.1 | helix-turn-helix transcriptional regulator | - |
| NV391_RS09230 (NV391_09245) | - | 1800360..1800566 (+) | 207 | WP_274764792.1 | hypothetical protein | - |
| NV391_RS09235 (NV391_09250) | - | 1800563..1800721 (-) | 159 | WP_155832140.1 | hypothetical protein | - |
| NV391_RS09240 (NV391_09255) | - | 1800718..1801455 (-) | 738 | WP_274764793.1 | Rha family transcriptional regulator | - |
| NV391_RS09245 (NV391_09260) | - | 1801452..1801883 (-) | 432 | WP_274764795.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NV391_RS09250 (NV391_09265) | - | 1801876..1802154 (-) | 279 | WP_274764796.1 | helix-turn-helix domain-containing protein | - |
| NV391_RS09255 (NV391_09270) | - | 1802346..1803242 (-) | 897 | WP_274764797.1 | DnaD domain protein | - |
| NV391_RS09260 (NV391_09275) | - | 1803256..1804059 (-) | 804 | WP_274764799.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| NV391_RS09265 (NV391_09280) | - | 1804040..1804930 (-) | 891 | WP_274764800.1 | recombinase RecT | - |
| NV391_RS09270 (NV391_09285) | - | 1805111..1805362 (-) | 252 | WP_274764801.1 | hypothetical protein | - |
| NV391_RS09275 (NV391_09290) | - | 1805375..1805608 (-) | 234 | WP_274764802.1 | hypothetical protein | - |
| NV391_RS09280 (NV391_09295) | - | 1805611..1805943 (-) | 333 | WP_274764803.1 | DUF771 domain-containing protein | - |
| NV391_RS09285 (NV391_09300) | - | 1805930..1806433 (-) | 504 | WP_274764804.1 | hypothetical protein | - |
| NV391_RS09290 (NV391_09305) | - | 1806493..1806654 (+) | 162 | WP_274764806.1 | hypothetical protein | - |
| NV391_RS09295 (NV391_09310) | - | 1806898..1807116 (-) | 219 | WP_153521777.1 | helix-turn-helix transcriptional regulator | - |
| NV391_RS09300 (NV391_09315) | - | 1807256..1807618 (+) | 363 | WP_153521779.1 | helix-turn-helix domain-containing protein | - |
| NV391_RS09305 (NV391_09320) | - | 1807608..1808018 (+) | 411 | WP_274764808.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NV391_RS09310 (NV391_09325) | - | 1808102..1808692 (+) | 591 | WP_274764809.1 | DUF3862 domain-containing protein | - |
| NV391_RS09315 (NV391_09330) | - | 1808822..1809940 (+) | 1119 | WP_274764811.1 | tyrosine-type recombinase/integrase | - |
| NV391_RS09325 (NV391_09340) | - | 1810315..1810836 (-) | 522 | WP_274764813.1 | HdeD family acid-resistance protein | - |
| NV391_RS09330 (NV391_09345) | - | 1810960..1811610 (+) | 651 | WP_057867654.1 | metal-dependent transcriptional regulator | - |
| NV391_RS09335 (NV391_09350) | - | 1811918..1812706 (-) | 789 | WP_057867655.1 | DUF975 family protein | - |
| NV391_RS09340 (NV391_09355) | - | 1812764..1813696 (-) | 933 | WP_057867656.1 | DUF4097 family beta strand repeat-containing protein | - |
| NV391_RS09345 (NV391_09360) | - | 1813689..1814351 (-) | 663 | WP_057867657.1 | DUF1700 domain-containing protein | - |
| NV391_RS09350 (NV391_09365) | - | 1814341..1814658 (-) | 318 | WP_057867658.1 | PadR family transcriptional regulator | - |
| NV391_RS09355 (NV391_09370) | - | 1815198..1815851 (+) | 654 | WP_274764814.1 | amino acid ABC transporter permease | - |
| NV391_RS09360 (NV391_09375) | - | 1815864..1816502 (+) | 639 | WP_075887344.1 | amino acid ABC transporter ATP-binding protein | - |
| NV391_RS09365 (NV391_09380) | - | 1816522..1817376 (+) | 855 | WP_274764815.1 | amino acid ABC transporter substrate-binding protein | - |
| NV391_RS09370 (NV391_09385) | - | 1817475..1818452 (-) | 978 | WP_274764817.1 | ADP-ribosylglycohydrolase family protein | - |
| NV391_RS09375 (NV391_09390) | - | 1818883..1819356 (+) | 474 | WP_057867664.1 | nucleoside 2-deoxyribosyltransferase | - |
| NV391_RS09380 (NV391_09395) | - | 1819367..1819918 (+) | 552 | WP_075887341.1 | TetR/AcrR family transcriptional regulator | - |
| NV391_RS09385 (NV391_09400) | - | 1820009..1821187 (+) | 1179 | WP_075887340.1 | CynX/NimT family MFS transporter | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19038.82 Da Isoelectric Point: 4.9675
>NTDB_id=721142 NV391_RS09220 WP_420869526.1 1799507..1800022(-) (ssb) [Companilactobacillus crustorum strain X66]
MNLEVIIQMINRAILVGRLTRDPELRYTANGAAVASFTVAVNRTFTNSQGEREADFINCTIWRKAAENFANLVHKGSLVG
IDGRIQTSSYDNQQGQRVYRTDVIVENFSKLEWDNDSNGQSNGHADNQASKSSSTSSYSNQRADNMQKNNNTDPFADKGK
PIDISDDDLPF
MNLEVIIQMINRAILVGRLTRDPELRYTANGAAVASFTVAVNRTFTNSQGEREADFINCTIWRKAAENFANLVHKGSLVG
IDGRIQTSSYDNQQGQRVYRTDVIVENFSKLEWDNDSNGQSNGHADNQASKSSSTSSYSNQRADNMQKNNNTDPFADKGK
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=721142 NV391_RS09220 WP_420869526.1 1799507..1800022(-) (ssb) [Companilactobacillus crustorum strain X66]
ATGAATTTAGAGGTGATAATACAAATGATAAATAGAGCAATCCTAGTAGGTCGCCTGACACGTGATCCGGAGCTTCGATA
TACAGCTAATGGTGCAGCAGTTGCTAGTTTTACAGTTGCTGTTAATCGTACATTTACTAACTCACAAGGCGAACGTGAAG
CCGACTTTATCAATTGTACTATTTGGCGAAAAGCTGCTGAGAACTTTGCTAATTTAGTTCATAAAGGTTCACTCGTTGGC
ATTGATGGACGTATTCAAACAAGTTCATATGACAATCAGCAAGGACAACGAGTTTACAGAACAGATGTCATTGTAGAAAA
CTTCTCAAAGCTTGAATGGGATAACGATTCAAATGGTCAATCTAATGGGCATGCAGATAATCAAGCAAGTAAATCCAGTA
GTACCAGTAGCTACAGCAATCAACGTGCAGATAATATGCAGAAAAACAATAATACCGATCCATTCGCTGACAAAGGAAAA
CCTATTGATATTAGTGACGATGACCTTCCATTCTAA
ATGAATTTAGAGGTGATAATACAAATGATAAATAGAGCAATCCTAGTAGGTCGCCTGACACGTGATCCGGAGCTTCGATA
TACAGCTAATGGTGCAGCAGTTGCTAGTTTTACAGTTGCTGTTAATCGTACATTTACTAACTCACAAGGCGAACGTGAAG
CCGACTTTATCAATTGTACTATTTGGCGAAAAGCTGCTGAGAACTTTGCTAATTTAGTTCATAAAGGTTCACTCGTTGGC
ATTGATGGACGTATTCAAACAAGTTCATATGACAATCAGCAAGGACAACGAGTTTACAGAACAGATGTCATTGTAGAAAA
CTTCTCAAAGCTTGAATGGGATAACGATTCAAATGGTCAATCTAATGGGCATGCAGATAATCAAGCAAGTAAATCCAGTA
GTACCAGTAGCTACAGCAATCAACGTGCAGATAATATGCAGAAAAACAATAATACCGATCCATTCGCTGACAAAGGAAAA
CCTATTGATATTAGTGACGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
99.415 |
0.591 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.814 |
100 |
0.561 |