Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NV391_RS02420 Genome accession   NZ_CP103039
Coordinates   479939..480469 (+) Length   176 a.a.
NCBI ID   WP_274765311.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 474939..485469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS02380 (NV391_02385) - 475293..475535 (+) 243 WP_274765300.1 helix-turn-helix transcriptional regulator -
  NV391_RS02385 (NV391_02390) - 475757..476134 (-) 378 WP_274765301.1 DUF2513 domain-containing protein -
  NV391_RS02390 (NV391_02395) - 476145..477179 (-) 1035 WP_274765302.1 hypothetical protein -
  NV391_RS02395 (NV391_02400) - 477239..477964 (+) 726 WP_274765304.1 phage regulatory protein/antirepressor Ant -
  NV391_RS02400 (NV391_02405) - 478260..478577 (+) 318 WP_274765306.1 DUF771 domain-containing protein -
  NV391_RS02405 (NV391_02410) - 478580..478807 (+) 228 WP_274765307.1 hypothetical protein -
  NV391_RS02410 (NV391_02415) - 478820..479014 (+) 195 WP_274765308.1 hypothetical protein -
  NV391_RS02415 (NV391_02420) - 479118..479942 (+) 825 WP_274765310.1 conserved phage C-terminal domain-containing protein -
  NV391_RS02420 (NV391_02425) ssbA 479939..480469 (+) 531 WP_274765311.1 single-stranded DNA-binding protein Machinery gene
  NV391_RS02425 (NV391_02430) - 480485..480952 (+) 468 WP_274765312.1 class I SAM-dependent methyltransferase -
  NV391_RS02430 (NV391_02435) - 480949..481311 (+) 363 WP_274765313.1 hypothetical protein -
  NV391_RS02435 (NV391_02440) - 481301..481501 (+) 201 WP_274765314.1 hypothetical protein -
  NV391_RS02440 (NV391_02445) - 481514..481699 (+) 186 WP_274765315.1 hypothetical protein -
  NV391_RS02445 (NV391_02450) - 481712..481906 (+) 195 WP_274765316.1 hypothetical protein -
  NV391_RS02450 (NV391_02455) - 481903..482310 (+) 408 WP_274765317.1 DUF1642 domain-containing protein -
  NV391_RS02455 (NV391_02460) - 482307..482465 (+) 159 WP_274765318.1 hypothetical protein -
  NV391_RS02460 (NV391_02465) - 482462..482698 (+) 237 WP_274765320.1 hypothetical protein -
  NV391_RS02465 (NV391_02470) - 482842..484611 (+) 1770 WP_274765321.1 hypothetical protein -
  NV391_RS02470 (NV391_02475) - 484694..485134 (+) 441 WP_274765323.1 ArpU family phage packaging/lysis transcriptional regulator -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19707.42 Da        Isoelectric Point: 7.9651

>NTDB_id=721126 NV391_RS02420 WP_274765311.1 479939..480469(+) (ssbA) [Companilactobacillus crustorum strain X66]
MINDVVLVGRLTKDPQVQYTQAGNGVAYVNFILAVNRTFTNSKGKREADFISCQLWRKGAENLGKYATKGSLIGIQGRIQ
TSSYDNQQGQRVYRTDIVSDRFSLLESKQEAEARRHNANQNQQENNSNSNYRGQNTNSNSDYGNKNTNSIGNGNQGNDPF
FDKSQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=721126 NV391_RS02420 WP_274765311.1 479939..480469(+) (ssbA) [Companilactobacillus crustorum strain X66]
ATGATAAATGACGTTGTTTTAGTGGGACGTCTAACTAAAGACCCACAGGTTCAATATACTCAGGCTGGTAATGGAGTAGC
ATACGTCAATTTCATTCTGGCAGTGAATCGAACATTTACTAATTCCAAAGGCAAACGTGAAGCTGATTTTATTTCTTGTC
AACTTTGGCGTAAGGGTGCAGAAAATCTCGGGAAGTATGCTACTAAGGGTTCACTGATTGGTATTCAAGGAAGAATACAA
ACAAGTTCTTATGACAATCAACAAGGTCAAAGAGTTTACAGAACTGATATTGTATCAGATAGATTTTCACTTTTGGAGTC
GAAACAAGAAGCGGAGGCACGCAGACATAATGCTAATCAGAACCAGCAGGAAAATAATTCAAATAGCAATTATAGAGGTC
AAAATACTAATTCGAATAGCGACTACGGAAATAAAAATACTAATTCGATAGGCAATGGAAATCAAGGCAATGATCCATTT
TTTGATAAATCGCAACCGATAGATATTTCAGATGATGATTTGCCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.718

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

48.889

100

0.5