Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW957_RS02535 Genome accession   NZ_CP102977
Coordinates   534317..534886 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 27-G-H     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529317..539886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW957_RS02510 (NW957_02510) cysE 530530..531177 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW957_RS02515 (NW957_02515) cysS 531161..532561 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  NW957_RS02520 (NW957_02520) - 532554..532958 (+) 405 WP_165469015.1 Mini-ribonuclease 3 -
  NW957_RS02525 (NW957_02525) rlmB 532966..533712 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW957_RS02530 (NW957_02530) - 533712..534236 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW957_RS02535 (NW957_02535) sigH 534317..534886 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  NW957_RS02540 (NW957_02540) rpmG 535001..535144 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW957_RS02545 (NW957_02545) secE 535200..535382 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW957_RS02550 (NW957_02550) nusG 535395..535943 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW957_RS02555 (NW957_02555) rplK 536124..536546 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW957_RS02560 (NW957_02560) rplA 536754..537446 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW957_RS02565 (NW957_02565) rplJ 537718..538218 (+) 501 WP_258414877.1 50S ribosomal protein L10 -
  NW957_RS02570 (NW957_02570) rplL 538261..538629 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW957_RS02575 (NW957_02575) - 538804..539412 (+) 609 WP_165469017.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=721025 NW957_RS02535 WP_000872876.1 534317..534886(+) (sigH) [Staphylococcus aureus strain 27-G-H]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=721025 NW957_RS02535 WP_000872876.1 534317..534886(+) (sigH) [Staphylococcus aureus strain 27-G-H]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984