Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW953_RS10280 Genome accession   NZ_CP102975
Coordinates   2108754..2109149 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2103754..2114149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS10255 (NW953_10255) thiE 2104214..2104855 (-) 642 WP_258409299.1 thiamine phosphate synthase -
  NW953_RS10260 (NW953_10260) thiM 2104857..2105648 (-) 792 WP_123097697.1 hydroxyethylthiazole kinase -
  NW953_RS10265 (NW953_10265) thiD 2105632..2106462 (-) 831 WP_258409300.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW953_RS10270 (NW953_10270) tenA 2106455..2107144 (-) 690 WP_000396067.1 thiaminase II -
  NW953_RS10275 (NW953_10275) sceD 2107670..2108365 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  NW953_RS10280 (NW953_10280) ssb 2108754..2109149 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW953_RS10285 (NW953_10285) - 2109343..2109783 (+) 441 WP_064289586.1 YwpF-like family protein -
  NW953_RS10290 (NW953_10290) fabZ 2109840..2110280 (-) 441 WP_258409301.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW953_RS10295 (NW953_10295) murA 2110314..2111579 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW953_RS10300 (NW953_10300) - 2111690..2111923 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW953_RS10305 (NW953_10305) - 2112575..2112979 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=721015 NW953_RS10280 WP_000932694.1 2108754..2109149(-) (ssb) [Staphylococcus aureus strain 16CS0209]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=721015 NW953_RS10280 WP_000932694.1 2108754..2109149(-) (ssb) [Staphylococcus aureus strain 16CS0209]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992