Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW953_RS07840 Genome accession   NZ_CP102975
Coordinates   1638340..1639026 (-) Length   228 a.a.
NCBI ID   WP_258409162.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633340..1644026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS07820 (NW953_07820) rpsT 1634254..1634505 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW953_RS07825 (NW953_07825) holA 1634550..1635524 (-) 975 WP_070004466.1 DNA polymerase III subunit delta -
  NW953_RS07830 (NW953_07830) comEC 1635581..1637782 (-) 2202 WP_070004467.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW953_RS07835 (NW953_07835) - 1637787..1638248 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW953_RS07840 (NW953_07840) comEA 1638340..1639026 (-) 687 WP_258409162.1 ComEA family DNA-binding protein Machinery gene
  NW953_RS07845 (NW953_07845) - 1639066..1639782 (-) 717 WP_070004469.1 class I SAM-dependent methyltransferase -
  NW953_RS07850 (NW953_07850) rsfS 1639785..1640138 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW953_RS07855 (NW953_07855) yqeK 1640139..1640723 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW953_RS07860 (NW953_07860) nadD 1640713..1641282 (-) 570 WP_029549643.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW953_RS07865 (NW953_07865) yhbY 1641285..1641575 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  NW953_RS07870 (NW953_07870) aroE 1641579..1642385 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  NW953_RS07875 (NW953_07875) yqeH 1642399..1643499 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25787.44 Da        Isoelectric Point: 9.0262

>NTDB_id=721004 NW953_RS07840 WP_258409162.1 1638340..1639026(-) (comEA) [Staphylococcus aureus strain 16CS0209]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVEDGDNSK
NKGPLYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNPNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=721004 NW953_RS07840 WP_258409162.1 1638340..1639026(-) (comEA) [Staphylococcus aureus strain 16CS0209]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCGAAGATGGAGATAATTCCAAA
AATAAAGGTCCTCTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGTAACCCAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTTAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961